BatadaLab / scIDLinks
scID
☆13Updated 3 years ago
Alternatives and similar repositories for scID
Users that are interested in scID are comparing it to the libraries listed below
Sorting:
- Single-cell Case Control Analysis☆52Updated this week
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 11 months ago
- ☆29Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- ☆20Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- ☆43Updated 4 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 7 months ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Hierarchical classification of cells☆26Updated last year
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- ☆57Updated last month
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- ☆37Updated 7 months ago
- Marker gene selection from scRNA-seq data☆15Updated 5 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 10 months ago
- ☆41Updated last month
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago