Alternatives and similar repositories for bioversions:

Users that are interested in bioversions are comparing it to the libraries listed below

• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆51Updated last month
• greenelab / finish-that-manuscript
  Ten quick tips to finish that manuscript that's 90% complete.
  ☆13Updated 2 years ago
• AnacletoLAB / RNA-KG
  ☆20Updated 4 months ago
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆15Updated 2 weeks ago
• ncats / stitcher
  A stitching platform for InXight
  ☆16Updated 4 months ago
• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆24Updated 10 months ago
• SuLab / DrugMechDB
  A database of paths that represent the mechanism of action from a drug to a disease in an indication.
  ☆58Updated last year
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 2 months ago
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆62Updated last week
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆19Updated 8 months ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• BZdrazil / Moving_Targets
  Repository for storing code related to the paper by Zdrazil B., Richter L., Brown N., and Guha R. "Moving Targets: Monitoring Target Tren…
  ☆9Updated 4 years ago
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆33Updated last week
• esacinc / PDC-Public
  The public repository for the Proteomic Data Commons UI and APIs
  ☆14Updated 9 months ago
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆18Updated 8 months ago
• adam-sam-brown / repoDB
  A Standard Database for Drug Repositioning
  ☆18Updated 7 years ago
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆18Updated 4 years ago
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆13Updated last year
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆28Updated last year
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated this week
• cthoyt / doctoral-thesis
  📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
  ☆29Updated 5 years ago
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆24Updated 4 years ago
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 3 years ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆21Updated 3 months ago
• cthoyt / ols-client
  🎡 Unified access to OLS instances like from the EBI and TIB
  ☆12Updated last year
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 4 years ago