Alternatives and similar repositories for bioversions

Users that are interested in bioversions are comparing it to the libraries listed below

• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆57Updated last month
• AnacletoLAB / RNA-KG
  Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…
  ☆24Updated last week
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆20Updated last year
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated last month
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago
• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆24Updated last year
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆72Updated last week
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆133Updated this week
• SuLab / DrugMechDB
  A database of paths that represent the mechanism of action from a drug to a disease in an indication.
  ☆65Updated 3 months ago
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 4 months ago
• michaelkyu / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆18Updated 6 years ago
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆38Updated this week
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• greenelab / finish-that-manuscript
  Ten quick tips to finish that manuscript that's 90% complete.
  ☆13Updated 3 years ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆58Updated this week
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆65Updated 3 years ago
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆19Updated 3 months ago
• dhimmel / obonet
  OBO-formatted ontologies → networkx (Python 3)
  ☆142Updated 5 months ago
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆27Updated 2 years ago
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 5 months ago
• cthoyt / ols-client
  🎡 Unified access to OLS instances like from the EBI and TIB
  ☆13Updated 3 weeks ago
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated last month
• tatonetti-lab / onsides
  A resource of adverse drug effects extracted from FDA structured product labels
  ☆81Updated 2 months ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆47Updated this week
• adam-sam-brown / repoDB
  A Standard Database for Drug Repositioning
  ☆19Updated 8 years ago
• elixir-europe / biohackathon-projects-2023
  Project code for BioHackathon Europe 2023.
  ☆18Updated last year
• dhimmel / clintrials
  Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov
  ☆27Updated 9 years ago
• opentargets-archive / opentargets-py
  Python client for the Open Targets REST API at targetvalidation.org
  ☆25Updated 4 years ago