10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC
☆25Jul 15, 2022Updated 3 years ago
Alternatives and similar repositories for 10xPilot_snRNAseq-human
Users that are interested in 10xPilot_snRNAseq-human are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 5 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated last year
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆61Updated this week
- Cell type purification by single-cell transcriptome-trained sorting☆14Jul 8, 2019Updated 6 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆49Feb 9, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- ☆26May 16, 2025Updated 10 months ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆12May 5, 2022Updated 3 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆14Aug 14, 2023Updated 2 years ago
- A single cell transcriptome atlas of the developing zebrafish hindbrain.☆14Jan 2, 2020Updated 6 years ago
- ☆16Jul 9, 2024Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Nov 16, 2021Updated 4 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.☆13Nov 24, 2025Updated 4 months ago
- CELLEX (CELL-type EXpression-specificity)☆44Jun 2, 2023Updated 2 years ago
- Human cortical cell types☆25Aug 21, 2019Updated 6 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 8 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆41Jan 6, 2021Updated 5 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated 11 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Updated this week
- Explore and download data from the recount3 project☆38Sep 24, 2025Updated 6 months ago
- ☆14Mar 11, 2022Updated 4 years ago
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated last year
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 4 months ago
- Code for the Recount project☆11Dec 13, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆11Sep 7, 2023Updated 2 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆90Jan 19, 2025Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆111Jan 15, 2026Updated 2 months ago
- A package, and script, to perform imaging transcriptomics on a neuroimaging scan.☆28Updated this week
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- Workflow for Sequenza, cellularity and ploidy☆27Aug 19, 2025Updated 7 months ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year