General, open-standard schema for cell annotations
☆16Jun 16, 2025Updated last year
Alternatives and similar repositories for cell-annotation-schema
Users that are interested in cell-annotation-schema are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 8 months ago
- Neuro Behaviour Ontology: an ontology for human and animal behaviour processes and behaviour phenotypes☆28Jan 14, 2026Updated 8 months ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 3 months ago
- Documentations of BigNeuron Project progress☆24Feb 3, 2016Updated 10 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Oct 5, 2026Updated last week
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- ☆13Dec 1, 2021Updated 4 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- ☆15Sep 22, 2026Updated 2 weeks ago
- Build contrasts for models defined with formulaic☆13Oct 5, 2026Updated last week
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Managing the progress for the RDA Working Group on Fair Mappings (https://www.rd-alliance.org/groups/fair-mappings-wg/).☆12Aug 5, 2026Updated 2 months ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Package for biomedical data model and metadata ingress management☆28Apr 4, 2026Updated 6 months ago
- Access public biological ontologies.☆14Aug 7, 2024Updated 2 years ago
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated last year
- Buffer compression and transformation codecs☆38Feb 21, 2025Updated last year
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 6 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆33Jul 13, 2023Updated 3 years ago
- ☆16Nov 5, 2021Updated 4 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Oct 3, 2022Updated 4 years ago
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 7 months ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆23Aug 17, 2026Updated last month
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Mar 1, 2020Updated 6 years ago
- QC and cell type assignment for patch-seq transcriptomics data☆27May 3, 2024Updated 2 years ago
- Making neuroimaging open from the grounds (consent form) and up (tools)☆45May 14, 2026Updated 4 months ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆17Mar 3, 2026Updated 7 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆29Mar 26, 2026Updated 6 months ago
- HuBMAP Data Portal front end☆13Updated this week
- A plugin for exporting RDF from OMERO☆16Feb 27, 2026Updated 7 months ago
- ☆44Oct 20, 2023Updated 2 years ago
- Deploy Dask on Marathon☆10Feb 6, 2017Updated 9 years ago
- Single Cell Consensus Clustering with Speed☆22Dec 12, 2022Updated 3 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Oct 5, 2026Updated last week