cellannotation / cell-annotation-schemaLinks
General, open-standard schema for cell annotations
☆17Updated 3 months ago
Alternatives and similar repositories for cell-annotation-schema
Users that are interested in cell-annotation-schema are comparing it to the libraries listed below
Sorting:
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Updated 3 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- ☆12Updated last year
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Updated last year
- public production version of sequin to share with the public☆11Updated 8 months ago
- ☆25Updated 4 years ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Updated last year
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated last week
- Access public biological ontologies.☆16Updated last year
- Code and documentation for the curation of cellxgene datasets☆50Updated last week
- scRNA-seq data visualization from scrattch☆27Updated last month
- Repository for storing prototype functionality implementations for the BKP☆34Updated 2 weeks ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- ☆12Updated 6 years ago
- GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge☆14Updated 8 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆25Updated last year
- Spatial Transcriptomics Dashboard☆27Updated 2 years ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆79Updated 3 months ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 7 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- script + metadata = standalone component☆43Updated 3 weeks ago
- PaNeV: an R package for a pathway-based network visualization☆10Updated last month
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Updated 3 months ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- snpnet - Efficient Lasso Solver for Large-scale genetic variant data☆18Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- BioThings API framework - Making high-performance API for biological annotation data☆47Updated 2 weeks ago