cellannotation / cell-annotation-schemaLinks
General, open-standard schema for cell annotations
☆16Updated 6 months ago
Alternatives and similar repositories for cell-annotation-schema
Users that are interested in cell-annotation-schema are comparing it to the libraries listed below
Sorting:
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Updated 3 years ago
- ☆26Updated 4 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Updated last year
- Access public biological ontologies.☆15Updated last year
- Open-source ImageJ plugin to quantify cardiomyocyte and cardiac muscle contraction in vitro and in vivo☆15Updated 4 years ago
- Code and documentation for the curation of cellxgene datasets☆50Updated last week
- requirements, examples, and tests for expression matrix file formats☆22Updated 7 years ago
- scRNA-seq data visualization from scrattch☆28Updated 4 months ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated 3 months ago
- ☆12Updated last year
- R package with netDx software and data for examples☆12Updated 2 years ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆81Updated this week
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- ☆13Updated 6 years ago
- snpnet - Efficient Lasso Solver for Large-scale genetic variant data☆20Updated last year
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Updated last year
- Repository for storing prototype functionality implementations for the BKP☆38Updated 2 weeks ago
- YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization☆13Updated last year
- script + metadata = standalone component☆44Updated 2 weeks ago
- Read RDS files, in Python☆25Updated last week
- Spatial Transcriptomics Dashboard☆27Updated 2 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Explore and download data from the recount3 project☆37Updated 2 months ago
- ☆13Updated 7 years ago
- public production version of sequin to share with the public☆11Updated 11 months ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated 2 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Updated last year
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17Updated last month