Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
☆10Nov 5, 2024Updated 2 years ago
Alternatives and similar repositories for slow5-rs
Users that are interested in slow5-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 5 months ago
- slow5lib is a software library for reading & writing SLOW5 files.☆49Aug 24, 2026Updated 2 months ago
- GPU CRF-CTC decoding for nanopore basecalling☆16Updated this week
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Partial Order Alignment with consensus CLI and Rust library☆13Oct 21, 2026Updated 2 weeks ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 10 months ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- A library and tool for accessing remote BLOW5 files.☆25Jun 3, 2026Updated 5 months ago
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 4 years ago
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- ☆18Oct 12, 2026Updated 3 weeks ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Oct 11, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 4 years ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 6 months ago
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆18Apr 1, 2026Updated 7 months ago
- Fast and exact gap-affine partial order alignment☆72Oct 22, 2026Updated 2 weeks ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 7 months ago
- A Rust implementation of SSHash☆20Oct 30, 2026Updated last week
- ☆17Jan 6, 2023Updated 3 years ago
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- HyperTwoBits implementation☆17Aug 29, 2025Updated last year
- A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML resul…☆20Dec 8, 2022Updated 3 years ago
- ☆14Sep 11, 2023Updated 3 years ago
- Fast non-cryptographic hash, with the benchmarks to prove it.☆21Jun 19, 2023Updated 3 years ago
- Overview of our data for microbial genomic benchmarking☆41Jun 19, 2026Updated 4 months ago
- A data manipulation tool for parquet, csv, and json data.☆43Mar 7, 2025Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Sep 3, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆107Aug 26, 2026Updated 2 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated 2 months ago
- Submit slurm sbatch jobs without a script☆77Aug 6, 2026Updated 3 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆45Feb 13, 2026Updated 8 months ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 10 months ago