10XGenomics / bamtofastq
Convert 10x BAM files to the original FASTQs compatible with 10x pipelines
☆63Updated last month
Alternatives and similar repositories for bamtofastq
Users that are interested in bamtofastq are comparing it to the libraries listed below
Sorting:
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- ☆73Updated last year
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆27Updated 5 months ago
- Tutorial Website☆59Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 9 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 2 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆59Updated last year
- SNV calling from single cell sequencing☆99Updated 6 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆65Updated this week
- mgatk: mitochondrial genome analysis toolkit☆108Updated 3 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Links to ATAC-seq analysis tools☆65Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆38Updated 5 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- ☆30Updated 6 years ago
- Analysis of Paired-Tag datasets☆42Updated last year
- scWGCNA☆60Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- Genomic coordinates of problematic genomic regions as GRanges☆37Updated 5 months ago
- IDR☆31Updated 2 years ago
- ☆57Updated 4 years ago