Convert 10x BAM files to the original FASTQs compatible with 10x pipelines
☆68Feb 10, 2026Updated 5 months ago
Alternatives and similar repositories for bamtofastq
Users that are interested in bamtofastq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated 2 years ago
- Rust utility code☆32Feb 9, 2024Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- Rust wrapper for STAR aligner☆22Apr 13, 2026Updated 3 months ago
- Tools for working with BUS files☆102May 27, 2025Updated last year
- Single-Cell Genotyping Tool☆219Oct 2, 2023Updated 2 years ago
- ☆85Dec 11, 2023Updated 2 years ago
- Clustering scRNAseq by genotypes☆210Apr 30, 2026Updated 2 months ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- Interfaces for HDF5-based Single Cell File Formats☆178Nov 4, 2023Updated 2 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆14Nov 29, 2025Updated 7 months ago
- Count HLA alleles in single-cell RNA-seq data☆64Nov 5, 2021Updated 4 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 2 months ago
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆213Jul 10, 2026Updated last week
- ☆11Dec 17, 2025Updated 7 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆30Aug 21, 2024Updated last year
- a lexicographically-based GTF/GFF sorter☆39Updated this week
- Universal Single-Cell Genomics Preprocessing package☆50Updated this week
- ☆55Feb 19, 2025Updated last year
- 10x Genomics Single Cell Analysis☆470Dec 10, 2025Updated 7 months ago
- A Shiny web app for mapping datasets using Seurat v4☆150May 22, 2026Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆554Mar 21, 2025Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated last year
- A tool to find sequencing data and metadata from public databases.☆601Aug 13, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- VDJ Clonotyping & Analysis Tools☆50Mar 7, 2025Updated last year
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 7 months ago
- ☆12Jun 28, 2024Updated 2 years ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆180Dec 29, 2020Updated 5 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Jul 19, 2023Updated 3 years ago