igvteam / spacewalkLinks
Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js and juicebox.js instances for rapid and intuitive visual comparison and interaction between 3D data and 1D genomic data.
☆11Updated 5 months ago
Alternatives and similar repositories for spacewalk
Users that are interested in spacewalk are comparing it to the libraries listed below
Sorting:
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32Updated 3 years ago
- Python NGS Repository☆9Updated last year
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆40Updated 3 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 4 months ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆89Updated 6 months ago
- OLD REPOSITORY - Go to☆31Updated 7 years ago
- Lightweight converter between hic and cool contact matrices.☆73Updated last year
- ☆51Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- HiGlass track for displaying arcs between disconnected regions☆9Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 8 months ago
- GTEx Visualizations☆64Updated 4 years ago
- ☆23Updated 5 years ago
- Genome-wide contact analysis using sklearn☆67Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated 2 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- High performance WebGL genome visualization☆15Updated 3 years ago
- ☆26Updated 2 years ago
- Python bindings to UCSC BigWig and BigBed library☆33Updated 3 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Blazing fast toolkit to work with .hic and .cool files☆32Updated last week
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆59Updated 3 weeks ago
- Module for embedding igv.js in an IPython notebook☆76Updated 6 months ago
- Reconstruction of focal amplifications with long reads☆21Updated 3 weeks ago
- The script presents a simple way to visualize features on human chromosome ideograms☆42Updated 3 months ago
- IDR☆31Updated 2 years ago