igvteam / spacewalkLinks
Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js and juicebox.js instances for rapid and intuitive visual comparison and interaction between 3D data and 1D genomic data.
☆11Updated 2 weeks ago
Alternatives and similar repositories for spacewalk
Users that are interested in spacewalk are comparing it to the libraries listed below
Sorting:
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32Updated 3 years ago
- GTEx Visualizations☆64Updated 4 years ago
- OLD REPOSITORY - Go to☆31Updated 7 years ago
- High performance WebGL genome visualization☆15Updated 3 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated this week
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 5 months ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆89Updated 7 months ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- ☆51Updated 2 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆40Updated 4 months ago
- Processing and plotting tools for genomics data☆21Updated 2 weeks ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆40Updated 2 weeks ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 8 months ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆89Updated 2 years ago
- Reference genome resource manager☆75Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Biological sequence visualization functions in R☆12Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆76Updated last month
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆14Updated 3 years ago
- ☆71Updated 2 years ago
- IDR☆31Updated 2 years ago
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆10Updated 6 months ago
- FusionInspector code☆58Updated 2 weeks ago
- Utilities for large scale distributed single cell data processing☆24Updated last month
- Normalizing Hi-C contact counts efficiently☆35Updated 3 months ago
- ☆23Updated 7 years ago