regexident / rust-seal
Rust implementation of Needleman-Wunsch & Smith-Waterman sequence alignment
☆20Updated 2 years ago
Alternatives and similar repositories for rust-seal:
Users that are interested in rust-seal are comparing it to the libraries listed below
- Rust edit distance routines accelerated using SIMD. Supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, etc. distance cal…☆106Updated last year
- Parallel Barnes-Hut t-SNE implementation written in Rust.☆73Updated 4 months ago
- Fast hierarchical agglomerative clustering in Rust.☆93Updated last year
- Out-of-memory sorting of large datasets map / reduce style processing☆47Updated 3 weeks ago
- Rust implementation of a fast, easy, interval tree library nim-lapper☆58Updated 9 months ago
- A library of common biomedical types.☆37Updated this week
- Collection of succinct data structures in Rust☆82Updated last year
- Locality Sensitive Hashing in Rust with Python bindings☆113Updated last year
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆23Updated 4 months ago
- Hidden Markov Models in Rust☆69Updated 10 months ago
- data embedding based on approximate nearest neighbour☆32Updated this week
- DBSCAN, HDBSCAN, and OPTICS clustering algorithms.☆31Updated last month
- ☆20Updated 11 months ago
- bgzip support for Rust☆16Updated last year
- Parallel iterator processing library for Rust☆101Updated last year
- A library for easy, fast, and efficient reading & writing of PLINK Bed files☆73Updated 2 months ago
- Fast and scalable minimal perfect hashing for massive key sets☆139Updated 6 months ago
- Xor filters - efficient probabilistic hashsets. Faster and smaller than bloom and cuckoo filters.☆133Updated 9 months ago
- Rust implementations of succinct data structures☆51Updated 2 months ago
- Sample Python extension using Rust/PyO3/tch to interact with PyTorch☆34Updated 11 months ago
- Alignment-based gene expression quantification☆27Updated 8 months ago
- ☆62Updated last year
- Multi-threaded Compression☆154Updated 10 months ago
- Rust wrappers for NGT approximate nearest neighbor search☆37Updated 8 months ago
- A very fast interval tree data structure☆114Updated 8 months ago
- A server implementation of the htsget protocol for bioinformatics in Rust☆41Updated last week
- Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.☆67Updated 5 months ago
- Hardware go brrr bounded context suffix array construction algorithm☆18Updated last year
- Parallelized zip archive reading☆35Updated last month
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆116Updated 4 years ago