Alternatives and similar repositories for rust-bio-tools

Users that are interested in rust-bio-tools are comparing it to the libraries listed below

• rust-bio / rust-htslib
  This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
  ☆336Updated 2 weeks ago
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆198Updated 3 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 7 months ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆167Updated 6 months ago
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆129Updated last week
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆39Updated 6 months ago
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• COMBINE-lab / alevin-fry
  🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…
  ☆194Updated 3 months ago
• zaeleus / noodles
  Bioinformatics I/O libraries in Rust
  ☆627Updated last week
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆70Updated last year
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆91Updated 3 weeks ago
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated last year
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆137Updated 8 months ago
• stjude-rust-labs / sprocket
  A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
  ☆93Updated this week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆98Updated 6 months ago
• mbhall88 / rasusa
  Randomly subsample sequencing reads or alignments
  ☆244Updated last week
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆142Updated last month
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated last week
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆80Updated this week
• RagnarGrootKoerkamp / astar-pairwise-aligner
  A pairwise sequence aligner written in Rust
  ☆137Updated 3 months ago
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆31Updated 4 years ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆46Updated 3 weeks ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated 2 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆92Updated last month
• Daniel-Liu-c0deb0t / block-aligner
  SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …
  ☆138Updated last year
• sharkLoc / rust-in-bioinformatics
  A collection of genomics software tools written in Rust
  ☆75Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆104Updated last week
• esteinig / nanoq
  Minimal but speedy quality control for nanopore reads in Rust
  ☆138Updated last year
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆75Updated 3 weeks ago