A set of command line utilities based on Rust-Bio.
☆205Jun 24, 2024Updated 2 years ago
Alternatives and similar repositories for rust-bio-tools
Users that are interested in rust-bio-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆367Updated this week
- A library of common biomedical types.☆40Apr 14, 2025Updated last year
- This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementat…☆1,818Jul 6, 2026Updated 2 weeks ago
- Bioinformatics I/O libraries in Rust☆712Jul 11, 2026Updated last week
- bioinformatics toolkit in rust☆107Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 5 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Per-base per-nucleotide depth analysis☆150May 9, 2026Updated 2 months ago
- an API for intersections of genomic data☆148Mar 12, 2026Updated 4 months ago
- The D4 Quantitative Data Format☆173Nov 28, 2025Updated 7 months ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 months ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆138Jul 13, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated 3 weeks ago
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 11 months ago
- Efficient querying of biological databases☆44Oct 27, 2025Updated 8 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 10 months ago
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 6 months ago
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 2 months ago
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast FASTX parsing and k-mer methods in Rust☆213Jun 22, 2026Updated last month
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last week
- Simple and transparent support for compressed files.☆81Jul 1, 2026Updated 3 weeks ago
- ☆102Apr 22, 2024Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Fast approximate string searching☆158Jul 13, 2026Updated last week
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 7 months ago
- ☆52Sep 20, 2022Updated 3 years ago
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆196Mar 10, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 8 months ago
- A high-performance BigWig and BigBed library in Rust☆118Jul 6, 2026Updated 2 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 8 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 10, 2026Updated last week
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- ☆57Aug 11, 2022Updated 3 years ago
- cython + htslib == fast VCF and BCF processing☆446Jun 25, 2026Updated 3 weeks ago