rust-bio / rust-bio-toolsLinks
A set of command line utilities based on Rust-Bio.
☆199Updated last year
Alternatives and similar repositories for rust-bio-tools
Users that are interested in rust-bio-tools are comparing it to the libraries listed below
Sorting:
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆333Updated last week
- Fast FASTX parsing and k-mer methods in Rust☆195Updated last month
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆128Updated this week
- A library of common biomedical types.☆38Updated 4 months ago
- FASTA and FASTQ parsing in Rust☆79Updated 5 months ago
- The D4 Quantitative Data Format☆166Updated 4 months ago
- ☆51Updated 2 years ago
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆191Updated 3 weeks ago
- Rust utility code☆33Updated last year
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆137Updated 6 months ago
- Bioinformatics I/O libraries in Rust☆609Updated last week
- Command line utility for manipulating Illumina-generated FASTQ files.☆89Updated 5 months ago
- Bioinformatics Algorithms implemented in Rust for Learners☆32Updated 4 years ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Updated 4 years ago
- De Bruijn graphs in Rust☆71Updated last year
- Alignment-based gene expression quantification☆29Updated 4 months ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 4 months ago
- Per-base per-nucleotide depth analysis☆137Updated 2 weeks ago
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆88Updated this week
- bioinformatics toolkit in rust☆90Updated 2 months ago
- Randomly subsample sequencing reads or alignments☆236Updated last month
- A server implementation of the htsget protocol for bioinformatics in Rust☆45Updated last week
- Grep for FASTQ files☆99Updated 4 months ago
- A high-performance BigWig and BigBed library in Rust☆101Updated 2 months ago
- A small database of weird gene annotations☆202Updated last week
- A pairwise sequence aligner written in Rust☆136Updated last month
- A high efficiency binary format for sequencing data☆69Updated last month
- Rust bindings to minimap2 library☆101Updated last week
- ☆58Updated 3 years ago