rust-bio / rust-bio-toolsLinks
A set of command line utilities based on Rust-Bio.
☆200Updated last year
Alternatives and similar repositories for rust-bio-tools
Users that are interested in rust-bio-tools are comparing it to the libraries listed below
Sorting:
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆337Updated last month
- Fast FASTX parsing and k-mer methods in Rust☆199Updated 3 months ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆129Updated this week
- FASTA and FASTQ parsing in Rust☆78Updated 8 months ago
- The D4 Quantitative Data Format☆168Updated 6 months ago
- A library of common biomedical types.☆40Updated 7 months ago
- ☆50Updated 3 years ago
- Rust utility code☆32Updated last year
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆196Updated 3 months ago
- De Bruijn graphs in Rust☆70Updated last year
- A pairwise sequence aligner written in Rust☆141Updated 3 weeks ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆137Updated 9 months ago
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- Bioinformatics I/O libraries in Rust☆630Updated last week
- Command line utility for manipulating Illumina-generated FASTQ files.☆92Updated last month
- Bioinformatics Algorithms implemented in Rust for Learners☆31Updated 4 years ago
- Fasten toolkit, for streaming operations on fastq files☆80Updated 3 weeks ago
- Per-base per-nucleotide depth analysis☆140Updated last month
- Randomly subsample sequencing reads or alignments☆245Updated last week
- Grep for FASTQ files☆102Updated 7 months ago
- bioinformatics toolkit in rust☆93Updated last month
- A high-performance BigWig and BigBed library in Rust☆107Updated 3 weeks ago
- diploid SNV caller for error-prone reads☆204Updated last year
- an API for intersections of genomic data☆73Updated this week
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆99Updated this week
- A collection of genomics software tools written in Rust☆81Updated 3 weeks ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆183Updated last year
- A high efficiency binary format for sequencing data☆77Updated last month
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆138Updated last year
- A genomic minhashing implementation in Rust☆101Updated 5 months ago