ocxtal / udon
BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
☆20Updated last year
Alternatives and similar repositories for udon:
Users that are interested in udon are comparing it to the libraries listed below
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 10 months ago
- Alignment-based gene expression quantification☆27Updated last month
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 5 months ago
- ☆27Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 10 months ago
- Fast interval intersection library☆40Updated 2 months ago
- Rust UMI Directional Adjacency Deduplicator☆15Updated 5 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- gia: Genomic Interval Arithmetic☆62Updated 8 months ago
- Iterate over minimizers of a DNA sequence☆29Updated 9 months ago
- Command line tools for IntSpan related bioinformatics operations☆13Updated last month
- ☆11Updated 2 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆30Updated last year
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated this week
- Rust bindings to minimap2 library☆95Updated last week
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆19Updated this week
- Rust in bioinformatics and computational biology☆20Updated 2 years ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 6 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- GBWT-based handle graph☆31Updated last month
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 5 months ago
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- Rust package for constructing and analyzing phylogenies.☆15Updated last week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated 3 months ago
- A read alignment visualization library for long reads☆11Updated 2 years ago
- Rust library for processing sequencing reads.☆22Updated 8 months ago