ocxtal / udon
BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
☆20Updated last year
Related projects ⓘ
Alternatives and complementary repositories for udon
- Alignment-based gene expression quantification☆26Updated 5 months ago
- Rust bindings to minimap2 library☆66Updated 3 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆14Updated last month
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago
- Rust UMI Directional Adjacency Deduplicator☆14Updated 4 years ago
- ☆26Updated 7 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 4 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- GBWT-based handle graph☆30Updated 2 weeks ago
- Host depletion optimised for clinical metagenomic sequencing applications☆14Updated this week
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- A FASTA/FASTQ format parser library☆20Updated 8 months ago
- ☆16Updated last week
- Toolkit for manipulating FASTA and SAM files☆17Updated 8 months ago
- Rust in bioinformatics and computational biology☆19Updated 2 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆30Updated last year
- FASTA and FASTQ parsing in Rust☆72Updated 11 months ago
- De novo metagenome assembler☆13Updated last year
- Command line tools for IntSpan related bioinformatics operations☆13Updated this week
- ntHash implementation in Rust☆34Updated 4 months ago
- Filter of Pairwise Alignement☆44Updated 2 years ago
- ☆11Updated 2 years ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆13Updated last year
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆24Updated 2 months ago
- A read alignment visualization library for long reads☆11Updated 2 years ago
- GBWT in Rust☆42Updated this week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆21Updated 2 months ago