Alternatives and similar repositories for udon:

Users that are interested in udon are comparing it to the libraries listed below

• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated 7 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 6 months ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 5 years ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated 10 months ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 6 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 6 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆73Updated last year
• chfi / waragraph
  ☆27Updated 9 months ago
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆30Updated 3 years ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 2 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆58Updated 4 months ago
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆15Updated 3 years ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆17Updated 10 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated last week
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• ekg / dozyg
  sequence to graph mapper
  ☆11Updated 3 years ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 7 months ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 2 years ago
• mbhall88 / psdm
  Compute a pairwise SNP distance matrix from one or two alignment(s)
  ☆24Updated 4 months ago
• arewebioyet / arewebioyet.github.io
  Rust in bioinformatics and computational biology
  ☆20Updated 2 years ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆87Updated last week
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆44Updated 3 months ago
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆14Updated last year
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated this week
• 6br / hgb
  A read alignment visualization library for long reads
  ☆11Updated 2 years ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆14Updated 2 months ago