Alternatives and similar repositories for rust-bio-types:

Users that are interested in rust-bio-types are comparing it to the libraries listed below

• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated last month
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆34Updated 2 months ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated 2 years ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆75Updated 2 weeks ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated last year
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆30Updated 3 years ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated 10 months ago
• 10XGenomics / orbit
  Rust wrapper for STAR aligner
  ☆17Updated this week
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆92Updated 2 months ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆66Updated 8 months ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 9 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated 2 months ago
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆41Updated this week
• rust-bio / rust-bio-tools
  A set of command line utilities based on Rust-Bio.
  ☆191Updated 9 months ago
• COMBINE-lab / terminus
  ☆58Updated 2 years ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆32Updated last month
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆17Updated 3 weeks ago
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 3 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated 2 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆87Updated 10 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆61Updated 7 months ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆17Updated 3 years ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 5 years ago
• rust-bio / hts-sys
  Raw rust bindings for htslib
  ☆10Updated 3 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 months ago