Alternatives and similar repositories for rust-bio-types

Users that are interested in rust-bio-types are comparing it to the libraries listed below

• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated 2 weeks ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated last month
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• rust-bio / rust-bio-tools
  A set of command line utilities based on Rust-Bio.
  ☆199Updated last year
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆25Updated 3 years ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 6 months ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆37Updated this week
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆70Updated last year
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆45Updated last week
• stjude-rust-labs / wdl
  Rust crates for working with Workflow Description Language (WDL) documents.
  ☆57Updated 2 weeks ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated 5 months ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆75Updated this week
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆31Updated 4 years ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 4 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• 10XGenomics / orbit
  Rust wrapper for STAR aligner
  ☆18Updated last week
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 3 months ago
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated last year
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆19Updated 6 months ago
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆56Updated last month
• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆38Updated last month
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated 10 months ago
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 3 months ago
• arewebioyet / arewebioyet.github.io
  Rust in bioinformatics and computational biology
  ☆19Updated 2 years ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 5 years ago
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆21Updated 5 months ago
• steineggerlab / petasearch
  🧬 Efficient parallelized peta-scale protein database search
  ☆40Updated last year