Alternatives and similar repositories for sabreur:

Users that are interested in sabreur are comparing it to the libraries listed below

• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 2 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated last month
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆17Updated 11 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated last month
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆61Updated 6 months ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 5 years ago
• 10XGenomics / orbit
  Rust wrapper for STAR aligner
  ☆16Updated this week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 7 months ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆44Updated 2 years ago
• hhandika / segul
  An ultrafast and memory efficient tool for phylogenomics
  ☆24Updated last week
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• nh13 / fqme
  ☆22Updated 2 months ago
• hcdenbakker / colorid
  Experiments with using BIGSI data structure for metagenomic and QC applications
  ☆19Updated 6 months ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆24Updated 9 months ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• chfi / pafview
  ☆17Updated 3 weeks ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated this week
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆23Updated 2 years ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 3 years ago
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆27Updated 2 months ago
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆13Updated last month
• luizirber / nthash
  ntHash implementation in Rust
  ☆35Updated 7 months ago
• vgteam / GetBlunted
  For bluntifying overlapped GFAs
  ☆13Updated 6 months ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆14Updated 3 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆77Updated last month
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated 9 months ago
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 7 months ago