dib-lab / pybbhashView external linksLinks
A Python wrapper for the bbhash library for Minimal Perfect Hashing
☆19Oct 26, 2025Updated 3 months ago
Alternatives and similar repositories for pybbhash
Users that are interested in pybbhash are comparing it to the libraries listed below
Sorting:
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Sep 21, 2018Updated 7 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 6 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆26Apr 2, 2018Updated 7 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 9 years ago
- A genomic minhashing implementation in Rust☆101Jun 17, 2025Updated 7 months ago
- ☆15Apr 6, 2016Updated 9 years ago
- ☆18Apr 10, 2015Updated 10 years ago
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.☆18Feb 26, 2022Updated 3 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Nov 13, 2025Updated 3 months ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- Dugong - Scientific Linux Container☆18Jul 25, 2018Updated 7 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 2 months ago
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 3 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 8 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 3 years ago
- ☆18Mar 5, 2017Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22May 29, 2018Updated 7 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Jan 31, 2026Updated last week
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Feb 19, 2020Updated 5 years ago
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Apr 10, 2019Updated 6 years ago
- Streaming fragment assignment and quantification for high-throughput sequencing.☆38Nov 14, 2019Updated 6 years ago
- ☆23Sep 27, 2019Updated 6 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 2 years ago
- De Bruijn graphs in Rust☆72Jul 22, 2024Updated last year
- ☆24Apr 2, 2021Updated 4 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Download files from NCBI Entrez by accession☆134Sep 3, 2024Updated last year
- CAMITAX: Taxon labels for microbial genomes☆30Dec 14, 2023Updated 2 years ago
- Python3 module for running MUMmer and reading the output☆34Mar 24, 2025Updated 10 months ago
- GATB Minia assembly pipeline☆31Feb 2, 2023Updated 3 years ago