nextstrain / zika-tutorialLinks
Data and scripts for Zika virus tutorial
☆10Updated 7 months ago
Alternatives and similar repositories for zika-tutorial
Users that are interested in zika-tutorial are comparing it to the libraries listed below
Sorting:
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆9Updated 10 years ago
- Automatically exported from code.google.com/p/qsimscan☆13Updated 3 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated last year
- ☆12Updated 6 years ago
- Interpretation aids for genomic epidemiology☆9Updated 8 months ago
- Bacterial Annotation by Learned Representation of Genes☆57Updated 4 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- Inference of putative transmission phylogenetic clusters☆11Updated 4 years ago
- Mutation tracker for microbial genomes☆15Updated 4 years ago
- Scalable relaxed clock phylogenetic dating☆25Updated last year
- ☆24Updated 3 months ago
- Calculate distances between phylogenetic trees in R☆32Updated last week
- phylogenetic analyses informed by deep mutational scanning data☆15Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆17Updated 8 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 11 years ago
- wiki for the mothur software package☆20Updated this week
- Lecture on viral phylodynamics☆12Updated 3 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆15Updated 3 weeks ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- ☆31Updated 3 years ago
- R Data Exploration for Serratus☆15Updated 2 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Updated last year
- The Dinucleotide Quantification Python Package☆11Updated 3 years ago
- ☆67Updated 9 years ago
- SARs-CoV-2 Primer schemes☆16Updated 2 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago