ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
☆53Jun 18, 2020Updated 6 years ago
Alternatives and similar repositories for ClearMap
Users that are interested in ClearMap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆147Updated this week
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆94Mar 5, 2024Updated 2 years ago
- ☆20Apr 6, 2022Updated 4 years ago
- ☆24Sep 13, 2025Updated last year
- Janelia Animal Behavior Detector☆83Aug 20, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Fiber Photometry Modular Analysis Tool Suite☆44Jul 26, 2021Updated 5 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 months ago
- Automated 3D cell detection in very large images☆231Oct 6, 2026Updated last week
- ☆13Apr 27, 2020Updated 6 years ago
- ☆15Mar 10, 2020Updated 6 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆57Jan 22, 2025Updated last year
- ☆43Sep 29, 2021Updated 5 years ago
- ☆47Jun 18, 2026Updated 3 months ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆32Oct 13, 2023Updated 3 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 5 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Jul 16, 2021Updated 5 years ago
- Visualise brainreg registration output