ChristophKirst / ClearMapLinks
ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
☆53Updated 5 years ago
Alternatives and similar repositories for ClearMap
Users that are interested in ClearMap are comparing it to the libraries listed below
Sorting:
- ☆45Updated 5 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆55Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆108Updated 3 months ago
- ☆34Updated 6 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆140Updated last week
- The ImageJ framework for quantification of neuronal anatomy☆53Updated last week
- Brainways☆22Updated 3 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- ☆18Updated 3 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 8 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Tools for distributed alignment of massive images☆89Updated last week
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated last week
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Segmentation of anatomical structures in a common coordinate space☆34Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆24Updated last week
- CloudReg☆11Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated last week
- ☆18Updated 3 years ago
- A Python interface to access neuroanatomical atlases☆167Updated last week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆130Updated 2 weeks ago
- motion correction☆17Updated 2 years ago
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- ☆41Updated 4 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- ABBA, controlled from python☆16Updated 2 weeks ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆110Updated 2 months ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆92Updated 4 years ago