JaneliaSciComp / awesome-janelia-softwareLinks
A curated list of awesome Janelia software
☆17Updated 6 months ago
Alternatives and similar repositories for awesome-janelia-software
Users that are interested in awesome-janelia-software are comparing it to the libraries listed below
Sorting:
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- Workshop materials for "I2K 2022: From Images to Knowledge" conference☆11Updated 3 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆17Updated last year
- A Python module for accessing Hamamatsu DCIMG files☆14Updated 2 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 5 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆13Updated last week
- ☆17Updated 2 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- motion correction☆17Updated 2 years ago
- ImageJ convenience layer for N5☆17Updated 3 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Brainways☆21Updated 3 weeks ago
- Flow-Registration toolbox for 2P motion compensation☆25Updated this week
- ☆20Updated 6 years ago
- Dataset EXploration & Processing☆32Updated 2 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆67Updated last week
- Things we use regularly☆29Updated last month
- Image acquisition software for mesoSPIM light-sheet microscopes.☆43Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- Tools for distributed alignment of massive images☆86Updated last week
- A napari plugin to analysis point spread functions.☆13Updated 5 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated this week
- ☆12Updated 2 weeks ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆21Updated 10 months ago
- Lattice light-sheet post-processing utility.☆29Updated 2 weeks ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated 2 weeks ago