Alternatives and similar repositories for awesome-janelia-software

Users that are interested in awesome-janelia-software are comparing it to the libraries listed below

• AllenCell / napari-allencell-segmenter
  A plugin that enables image segmentation provided by Allen Institute for Cell Science
  ☆17Updated last month
• lens-biophotonics / dcimg
  A Python module for accessing Hamamatsu DCIMG files
  ☆14Updated 2 years ago
• chanzuckerberg / napari-plugin-alfa-cohort
  Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration
  ☆11Updated 4 years ago
• BioimageAnalysisCoreWEHI / napari_lattice
  Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …
  ☆14Updated last week
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆14Updated 2 years ago
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 5 years ago
• YijunBao / Shallow-UNet-Neuron-Segmentation_SUNS
  ☆17Updated 2 years ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆26Updated 3 weeks ago
• bkntr / brainways
  Brainways
  ☆22Updated 4 months ago
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆23Updated 4 years ago
• imagej / i2k-2022-pyimagej
  Workshop materials for "I2K 2022: From Images to Knowledge" conference
  ☆11Updated 3 years ago
• QI2lab / OPM
  Archived: control, reconstruction, and analysis code for oblique plane microscopy.
  ☆22Updated 8 months ago
• albert597 / TRAILMAP
  ☆46Updated 5 years ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆34Updated 3 weeks ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated last year
• abcucberkeley / PetaKit5D
  ☆49Updated 2 weeks ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆15Updated 3 weeks ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆71Updated 3 weeks ago
• fmi-faim / napari-psf-analysis
  A napari plugin to analysis point spread functions.
  ☆13Updated 9 months ago
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆44Updated last week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆90Updated last week
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆21Updated last month
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆22Updated last year
• EricThomson / CCN_caiman_mesmerize_workshop_2023
  Repo for CCN workshop on caiman and mesmerize in January 2023
  ☆13Updated 2 years ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆20Updated 7 years ago
• esgomezm / microscopy-dl-suite-tf
  Deep Learning segmentation suite designed for 2D microscopy image segmentation
  ☆10Updated 4 years ago
• brainglobe / napari-brainreg
  Visualise brainreg registration output
  ☆10Updated 4 years ago
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆19Updated 3 years ago