Alternatives and similar repositories for awesome-janelia-software

Users that are interested in awesome-janelia-software are comparing it to the libraries listed below

• nitinagarwal / Mouse_Brain_Registration
  Geometry Processing of Conventionally Produced Mouse Brain Slice Images
  ☆7Updated 5 years ago
• chanzuckerberg / napari-plugin-alfa-cohort
  Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration
  ☆11Updated 4 years ago
• AllenCell / napari-allencell-segmenter
  A plugin that enables image segmentation provided by Allen Institute for Cell Science
  ☆16Updated last year
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 4 years ago
• bkntr / brainways
  Brainways
  ☆18Updated last month
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆15Updated 2 years ago
• BioimageAnalysisCoreWEHI / napari_lattice
  Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …
  ☆13Updated last month
• esgomezm / microscopy-dl-suite-tf
  Deep Learning segmentation suite designed for 2D microscopy image segmentation
  ☆10Updated 3 years ago
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆21Updated 2 months ago
• brainglobe / napari-brainreg
  Visualise brainreg registration output
  ☆10Updated 3 years ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• QI2lab / OPM
  Archived: control, reconstruction, and analysis code for oblique plane microscopy.
  ☆22Updated 3 months ago
• YijunBao / Shallow-UNet-Neuron-Segmentation_SUNS
  ☆17Updated 2 years ago
• lens-biophotonics / dcimg
  A Python module for accessing Hamamatsu DCIMG files
  ☆14Updated 2 years ago
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆23Updated 3 years ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 3 weeks ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated last week
• fmi-faim / napari-psf-analysis
  A napari plugin to analysis point spread functions.
  ☆13Updated 3 months ago
• imagej / i2k-2022-pyimagej
  Workshop materials for "I2K 2022: From Images to Knowledge" conference
  ☆11Updated 3 years ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated last week
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 10 months ago
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆30Updated 6 months ago
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆42Updated 2 weeks ago
• abcucberkeley / PetaKit5D
  ☆45Updated 2 weeks ago
• ankilab / DeepD3
  ☆22Updated 4 months ago
• miura / NEUBIAS_AnalystSchool2020
  ☆13Updated 5 years ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆65Updated last week
• juglab / napari-n2v
  A self-supervised denoising algorithm.
  ☆26Updated last year
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆24Updated 4 years ago
• albert597 / TRAILMAP
  ☆45Updated 5 years ago