JaneliaSciComp / awesome-janelia-software
A curated list of awesome Janelia software
☆14Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for awesome-janelia-software
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 3 years ago
- Running compute-intense parts of BigStitcher distributed☆20Updated last week
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated 11 months ago
- Brainways☆14Updated last week
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆13Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆21Updated 3 years ago
- ☆28Updated this week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 3 years ago
- ☆31Updated 6 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆13Updated last week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 2 months ago
- ☆17Updated 2 years ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated last year
- Geometry Processing of Conventionally Produced Mouse Brain Slice Images☆7Updated 5 years ago
- napari plugin for trackastra☆12Updated 3 weeks ago
- ☆29Updated last month
- Segmentation of anatomical structures in a common coordinate space☆28Updated last week
- Process images using SimpleITK in napari☆19Updated last month
- ☆18Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12Updated last week
- Read and write files from the BrainGlobe neuroanatomy suite☆13Updated last week
- python tools for BigDataViewer☆21Updated last year
- MultiModal Big Image Data Sharing and Exploration☆14Updated last year
- Control, reconstruction, and analysis code for oblique plane microscopy.☆21Updated 3 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Visualise brainreg registration output☆10Updated 3 years ago
- Use ImageJ functionality from napari☆25Updated this week
- ImageJ convenience layer for N5☆15Updated 3 weeks ago
- 3D/4D volumetric rendering of microscopy data☆20Updated this week