A curated list of awesome Janelia software
☆17Feb 26, 2025Updated last year
Alternatives and similar repositories for awesome-janelia-software
Users that are interested in awesome-janelia-software are comparing it to the libraries listed below
Sorting:
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- ☆12Jan 10, 2021Updated 5 years ago
- A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.☆11Mar 31, 2022Updated 3 years ago
- A Python module for accessing Hamamatsu DCIMG files☆14Jun 28, 2023Updated 2 years ago
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- Building rodent behavioral testing devices using the Raspberry Pi computer.☆19Sep 28, 2021Updated 4 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆16Feb 23, 2026Updated last week
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆18Mar 4, 2022Updated 3 years ago
- AutoPilot library☆15Nov 15, 2016Updated 9 years ago
- A package to work with Zernike Polynomials in the Julia programming language.☆21Sep 29, 2024Updated last year
- An open-source ecosystem of hardware and software for head-fixed behavior☆13Sep 25, 2025Updated 5 months ago
- A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)☆16Jul 16, 2019Updated 6 years ago
- ☆16Nov 2, 2016Updated 9 years ago
- ☆41Sep 29, 2021Updated 4 years ago
- ☆17May 26, 2023Updated 2 years ago
- Tools for distributed alignment of massive images☆93Updated this week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Jan 26, 2026Updated last month
- img2vid☆21Dec 14, 2022Updated 3 years ago
- Python code for estimation of linear-nonlinear model parameters☆21Apr 9, 2021Updated 4 years ago
- ☆21Sep 9, 2021Updated 4 years ago
- Python package for analyzing behavioral data for Brain Observatory: Visual Behavior☆25Jan 8, 2025Updated last year
- 3D/4D volumetric rendering of microscopy data☆27Nov 10, 2025Updated 3 months ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆53Jun 1, 2025Updated 9 months ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Aug 18, 2018Updated 7 years ago
- Recordings of 10k neurons during spontaneous behaviors☆54Mar 22, 2024Updated last year
- Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher☆23Aug 29, 2024Updated last year
- A hub to start the next generation of Microscope Control Software☆59Jan 7, 2021Updated 5 years ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Dec 10, 2025Updated 2 months ago
- a Python API to record video & system timestamps from Imaging Source USB cameras☆69Feb 21, 2023Updated 3 years ago
- Matlab function to import ROIs from ImageJ☆27Dec 13, 2019Updated 6 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆35Dec 18, 2025Updated 2 months ago
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- UnitRefine is a machine-learning toolbox that simplifies spike sorting curation by reducing manual curation.☆68Feb 19, 2026Updated last week
- Toolbox for calculating optical PSFs☆31Jan 14, 2026Updated last month