JaneliaSciComp / awesome-janelia-software
A curated list of awesome Janelia software
☆15Updated 6 months ago
Alternatives and similar repositories for awesome-janelia-software:
Users that are interested in awesome-janelia-software are comparing it to the libraries listed below
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 3 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 5 months ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- ☆38Updated this week
- Brainways☆15Updated this week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- 3D/4D volumetric rendering of microscopy data☆21Updated last week
- Running compute-intense parts of BigStitcher distributed☆23Updated this week
- Segmentation of anatomical structures in a common coordinate space☆30Updated 2 weeks ago
- Geometry Processing of Conventionally Produced Mouse Brain Slice Images☆7Updated 5 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆13Updated last week
- Use ImageJ functionality from napari☆27Updated 3 weeks ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- my first baby steps with Napari☆10Updated 5 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆61Updated 2 weeks ago
- ☆10Updated 3 weeks ago
- python tools for BigDataViewer☆21Updated last month
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated last year
- Visualise brainreg registration output☆10Updated 3 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆38Updated this week
- Use Napari Viewer to display CZI images☆11Updated 2 years ago
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Updated 3 years ago
- Lattice light-sheet post-processing utility.☆27Updated 2 weeks ago
- Control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 2 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated last year
- ☆20Updated 3 weeks ago
- ☆11Updated last year
- Process images using SimpleITK in napari☆20Updated 4 months ago