Alternatives and similar repositories for roiextractors

Users that are interested in roiextractors are comparing it to the libraries listed below

• MouseLand / neuropop
  analysis tools for large-scale neural recordings
  ☆14Updated 3 months ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆37Updated last year
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 4 years ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆19Updated last week
• calebweinreb / SNUB
  ☆28Updated last year
• brainglobe / bgviewer
  Visualisation and exploration of brain atlases
  ☆9Updated 4 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• neuroinformatics-unit / NeuroBlueprint
  Lightweight data specification for systems neuroscience, inspired by BIDS.
  ☆19Updated 2 weeks ago
• adamshch / SEUDO
  ☆8Updated 3 years ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆59Updated 2 weeks ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆18Updated last month
• MetaCell / nwb-explorer
  NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files
  ☆25Updated last month
• flatironinstitute / figurl
  Shareable, interactive scientific figures in the cloud
  ☆36Updated 7 months ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated last week
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆101Updated this week
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆61Updated this week
• dimitri-yatsenko / awesome-neural-data-tools
  Tools, algorithms, and frameworks for managing and analyzing neural data.
  ☆20Updated 3 years ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆26Updated 4 months ago
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆16Updated last year
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated last week
• NeurodataWithoutBorders / nwbinspector
  Tool to help inspect NWB files for compliance with NWB Best Practices
  ☆20Updated last week
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• neuroinformatics-unit / fancylog
  Fancier logging with python.
  ☆12Updated last week
• INCF / neuroscience-data-structure
  Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …
  ☆22Updated 2 years ago
• nel-lab / FIOLA
  ☆34Updated last month
• EricThomson / CCN_caiman_mesmerize_workshop_2023
  Repo for CCN workshop on caiman and mesmerize in January 2023
  ☆13Updated 2 years ago
• kohth / cilds
  Dimensionality reduction of calcium-imaged neuronal population activity
  ☆14Updated 2 years ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆43Updated last week
• NeurodataWithoutBorders / pynwb-course
  Interactive Python course for using the Neurodata Without Borders format
  ☆15Updated 6 years ago