catalystneuro / roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
☆13Updated last week
Alternatives and similar repositories for roiextractors:
Users that are interested in roiextractors are comparing it to the libraries listed below
- ☆26Updated 7 months ago
- IaC codebase for the NeuroCAAS Platform☆36Updated last year
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆17Updated 2 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆15Updated last year
- Region Of Interest Classification and Tracking☆16Updated this week
- A package to manage electrophysiology analysis.☆14Updated this week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- Fancier logging with python.☆12Updated last week
- Web app for viewing results of ephys spike sorting☆26Updated this week
- NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files☆24Updated last week
- Read and write files from the BrainGlobe neuroanatomy suite☆13Updated last week
- Segmentation of anatomical structures in a common coordinate space☆30Updated last week
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆11Updated last year
- Visualisation and exploration of brain atlases☆9Updated 4 years ago
- Browser-based NWB visualization and DANDI exploration☆51Updated this week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆20Updated last week
- Analyze neuroscience data in the cloud☆19Updated 5 months ago
- ☆10Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆36Updated last week
- Tools for machine learning of animal behavior☆13Updated 11 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆17Updated this week
- Visualise brainreg registration output☆10Updated 3 years ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- ☆33Updated last year
- Re-usable GitHub Action scripts☆10Updated last week
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆54Updated this week
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆38Updated 6 months ago
- Schemata and libraries for neuroscientific data☆20Updated 3 months ago
- Mesoscale activity ephys ingest schema☆11Updated last year