Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
☆18Jun 8, 2026Updated last week
Alternatives and similar repositories for roiextractors
Users that are interested in roiextractors are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.☆52Feb 23, 2026Updated 3 months ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆25Nov 7, 2022Updated 3 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- NWB GUIDE is a desktop app that provides a no-code user interface for converting neurophysiology data to NWB.☆25May 25, 2026Updated 3 weeks ago
- A package to manage electrophysiology analysis.☆23Updated this week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Fast, volumetric cell detection. In development.☆24Jun 10, 2026Updated last week
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆22Jun 4, 2026Updated 2 weeks ago
- NIU website on common software problems and their troubleshooting☆10May 15, 2026Updated last month
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆46Mar 18, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Collection of probe description for probeinterface☆19Jun 10, 2026Updated last week
- brainglobe.info website☆14Jun 2, 2026Updated 2 weeks ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- Build unbiased anatomical templates from individual images☆13Jun 2, 2026Updated 2 weeks ago
- ☆11Oct 21, 2025Updated 7 months ago
- Anatomical space conventions made easy.☆12Jun 2, 2026Updated 2 weeks ago
- Tool to help inspect NWB files for compliance with NWB Best Practices☆22Jun 8, 2026Updated last week
- ☆10Mar 15, 2023Updated 3 years ago
- Jax implementation of normcorre☆15Jan 25, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- SpikeForest -- spike sorting analysis for website☆16Jul 7, 2020Updated 5 years ago
- An R toolbox for analysing movement across space and time☆11Jan 16, 2026Updated 5 months ago
- Fancier logging with python.☆16Jun 2, 2026Updated 2 weeks ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …☆23Apr 24, 2023Updated 3 years ago
- motion correction☆17Jan 27, 2023Updated 3 years ago
- A Python package to download neuronal morphologies☆17Jun 2, 2026Updated 2 weeks ago
- Re-usable GitHub Action scripts☆14May 5, 2026Updated last month
- Tools, algorithms, and frameworks for managing and analyzing neural data.☆21Mar 21, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A GUI for running popular spike sorting algorithms on extracellular data of any file format.☆15Jun 27, 2021Updated 4 years ago
- analysis tools for large-scale neural recordings☆17Apr 4, 2025Updated last year
- Segmentation of anatomical structures in a common coordinate space☆36Jun 2, 2026Updated 2 weeks ago
- CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.☆14Feb 7, 2024Updated 2 years ago
- calcium imaging pipeline tool☆49Aug 18, 2025Updated 10 months ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Jun 2, 2026Updated 2 weeks ago
- Web app for viewing results of ephys spike sorting☆29Sep 4, 2025Updated 9 months ago