Alternatives and similar repositories for roiextractors

Users that are interested in roiextractors are comparing it to the libraries listed below

• MouseLand / neuropop
  analysis tools for large-scale neural recordings
  ☆16Updated 8 months ago
• calebweinreb / SNUB
  ☆28Updated last month
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆39Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated this week
• neuroinformatics-unit / NeuroBlueprint
  Lightweight data specification for systems neuroscience, inspired by BIDS.
  ☆19Updated last week
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 5 years ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆20Updated last month
• MetaCell / nwb-explorer
  NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files
  ☆25Updated 3 months ago
• flatironinstitute / figurl
  Shareable, interactive scientific figures in the cloud
  ☆37Updated 3 months ago
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆27Updated 3 months ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆62Updated 2 weeks ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• int-brain-lab / mtscomp
  Multichannel time series lossless compression in pure Python based on NumPy and zlib
  ☆41Updated 8 months ago
• neuroinformatics-unit / fancylog
  Fancier logging with python.
  ☆14Updated last week
• flatironinstitute / dendro-old
  Analyze neuroscience data in the cloud
  ☆19Updated last year
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆65Updated this week
• PeyracheLab / miniscoPy
  A package to analyse calcium imaging data recorded with the Miniscope.
  ☆33Updated 3 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• MouseLand / receptivefield-explorer
  GUI to compute and explore receptive fields, primarily from calcium imaging recordings
  ☆13Updated 4 years ago
• zivlab / island
  Revealing neural correlates of behavior without behavioral measurements
  ☆15Updated 6 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆96Updated last year
• GoodhillLab / neural-assembly-detection
  Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…
  ☆12Updated 6 years ago
• PeyracheLab / Class-Decoding
  Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.
  ☆12Updated 5 years ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆71Updated this week
• int-brain-lab / ibl-neuropixel
  Collection of tools to handle Neuropixel 1.0 and 2.0 data
  ☆17Updated this week
• apasarkar / jnormcorre
  Jax implementation of normcorre
  ☆12Updated 10 months ago
• NeurodataWithoutBorders / pynwb-course
  Interactive Python course for using the Neurodata Without Borders format
  ☆15Updated 6 years ago
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• mesoscale-activity-map / map-ephys
  Mesoscale activity ephys ingest schema
  ☆11Updated 2 years ago