Alternatives and similar repositories for roiextractors

Users that are interested in roiextractors are comparing it to the libraries listed below

• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆38Updated last year
• calebweinreb / SNUB
  ☆28Updated 3 weeks ago
• MouseLand / neuropop
  analysis tools for large-scale neural recordings
  ☆16Updated 7 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• neuroinformatics-unit / NeuroBlueprint
  Lightweight data specification for systems neuroscience, inspired by BIDS.
  ☆19Updated last month
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated this week
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 4 years ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆20Updated 2 weeks ago
• MetaCell / nwb-explorer
  NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files
  ☆25Updated 2 months ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆60Updated this week
• flatironinstitute / figurl
  Shareable, interactive scientific figures in the cloud
  ☆37Updated 2 months ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• zivlab / island
  Revealing neural correlates of behavior without behavioral measurements
  ☆15Updated 6 years ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆64Updated this week
• PeyracheLab / miniscoPy
  A package to analyse calcium imaging data recorded with the Miniscope.
  ☆33Updated 3 years ago
• neuroinformatics-unit / fancylog
  Fancier logging with python.
  ☆14Updated 2 weeks ago
• int-brain-lab / mtscomp
  Multichannel time series lossless compression in pure Python based on NumPy and zlib
  ☆41Updated 8 months ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆67Updated this week
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆27Updated 2 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆96Updated last year
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆105Updated this week
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆46Updated 2 weeks ago
• cajal / pipeline
  Schemata and libraries for neuroscientific data
  ☆29Updated 2 months ago
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• dimitri-yatsenko / awesome-neural-data-tools
  Tools, algorithms, and frameworks for managing and analyzing neural data.
  ☆20Updated 3 years ago
• SpikeInterface / spikely
  A GUI for running popular spike sorting algorithms on extracellular data of any file format.
  ☆16Updated 4 years ago
• PeyracheLab / Class-Decoding
  Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.
  ☆12Updated 5 years ago
• cortex-lab / Rigbox
  A MATLAB toolbox for running behavioral neuroscience experiments and managing data
  ☆32Updated last year