Alternatives and similar repositories for nanom6A:

Users that are interested in nanom6A are comparing it to the libraries listed below

• weir12 / DENA
  Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
  ☆22Updated 2 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated 2 months ago
• darelab2014 / Dinopore
  DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
  ☆17Updated last year
• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆15Updated 3 weeks ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆39Updated 8 months ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆59Updated 5 months ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆13Updated 11 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆59Updated last year
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 4 years ago
• novoalab / nanoRMS
  Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…
  ☆23Updated 2 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆56Updated 3 months ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆45Updated 2 years ago
• LabShengLi / nanome
  NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)
  ☆30Updated last year
• sihaohuanguc / NanoSPA
  ☆14Updated last year
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 5 months ago
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆24Updated 10 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• weir12 / DeepEdit
  DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing
  ☆17Updated last year
• crimBubble / ECCsplorer
  The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…
  ☆19Updated 11 months ago
• timplab / nanopore-methylation-utilities
  ☆29Updated 4 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆52Updated 2 years ago
• WGLab / DeepMod2
  DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
  ☆45Updated 2 weeks ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆24Updated this week
• BioinfoUNIBA / REDItools2
  ☆54Updated 3 years ago
• LappalainenLab / lorals
  ☆33Updated last year
• nf-core / isoseq
  Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …
  ☆37Updated last week
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆46Updated 2 years ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated 10 months ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆42Updated last month
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated 11 months ago