gaoyubang / nanom6ALinks
☆23Updated 2 years ago
Alternatives and similar repositories for nanom6A
Users that are interested in nanom6A are comparing it to the libraries listed below
Sorting:
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆33Updated last week
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 3 months ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- ☆64Updated 2 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last week
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- ☆14Updated 2 years ago
- Somatic structural variant caller for long-read data☆85Updated last month
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆50Updated 3 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆56Updated 9 months ago
- New version of JACUSA -> 2.0☆30Updated 2 weeks ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated 3 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆75Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- Long Reads Annotation pipeline☆72Updated 3 years ago
- ☆60Updated 4 months ago