icthrm / cwSDTWnano
Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the continuous wavelet Subsequence DTW for nanopore raw signal search (cwSDTWnano), to enable the direct subsequence inquiry and exact mapping in the nanopore raw signal datasets. The proposed algorithms are based on …
☆10Updated 4 years ago
Alternatives and similar repositories for cwSDTWnano:
Users that are interested in cwSDTWnano are comparing it to the libraries listed below
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆14Updated 2 weeks ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated 11 months ago
- Extract modifed base call information from Guppy Fast5 files.☆13Updated 3 years ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆10Updated 2 weeks ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Python client library for Guppy☆31Updated 2 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 11 months ago
- ☆34Updated 11 months ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- ☆29Updated 4 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆9Updated 3 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆37Updated 3 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 3 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆16Updated 3 months ago
- A tool to detect structural variant☆18Updated 2 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Updated 7 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Quality control plotting for long reads☆10Updated 10 months ago
- ☆9Updated 3 years ago