saezlab / ocean
R package for metabolic enzyme enrichment anaylsis
☆12Updated 4 months ago
Alternatives and similar repositories for ocean:
Users that are interested in ocean are comparing it to the libraries listed below
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆17Updated last year
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆14Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated 4 months ago
- Perturb-seq analysis package☆14Updated 10 months ago
- ☆26Updated last year
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- scSNV Mapping tool for 10X Single Cell Data☆24Updated 11 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last week
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- CellAnn☆12Updated last year
- ☆42Updated 4 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated 11 months ago
- Clone of the Bioconductor repository for the scRNAseq package.☆25Updated last month
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Individual level Differential Expression Analysis for Single cells☆23Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 2 years ago
- Transcriptional Regulatory Inference Analysis from Gene Expression (TRIAGE)☆9Updated last year
- Algorithms for single-cell analysis☆29Updated 3 years ago
- ☆35Updated last week
- Code related to scRNA analysis using the scAmpi workflow☆24Updated 4 months ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 3 months ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago