R package for metabolic enzyme enrichment anaylsis
☆13Oct 24, 2025Updated 4 months ago
Alternatives and similar repositories for ocean
Users that are interested in ocean are comparing it to the libraries listed below
Sorting:
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 6 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ActiveDriverDB☆12May 1, 2023Updated 2 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 7 months ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- ☆14Dec 7, 2021Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆17Feb 18, 2026Updated last week
- End-guided RNA assembler☆15Dec 2, 2025Updated 2 months ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- ☆12Apr 16, 2021Updated 4 years ago
- ☆16Mar 2, 2023Updated 2 years ago
- reverse gene expression score☆15Sep 8, 2023Updated 2 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Mar 31, 2023Updated 2 years ago
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Jul 3, 2024Updated last year
- ☆15Dec 9, 2019Updated 6 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- ☆17May 15, 2024Updated last year
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated 11 months ago
- ☆15Jan 10, 2023Updated 3 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- A Julia package for extracting mutation signatures using topic models☆19Feb 23, 2022Updated 4 years ago
- The software of Pamona, a partial manifold alignment algorithm.☆21Mar 21, 2021Updated 4 years ago
- Sparse Canonical Correlation Analysis (sCCA)☆20Dec 3, 2021Updated 4 years ago
- An npm/browser module for easy matching XML and XPath to React Components and other stuff☆19Mar 14, 2023Updated 2 years ago
- Share Apache Arrow datasets between Python and R.☆18Oct 10, 2025Updated 4 months ago
- Decomposition of heterogeneous DNA methylomes☆23Jul 10, 2024Updated last year
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆28Jul 6, 2023Updated 2 years ago
- ☆25Apr 29, 2018Updated 7 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- ☆11Jul 3, 2022Updated 3 years ago
- fastx-utils using klib☆20Sep 1, 2020Updated 5 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago