R package for metabolic enzyme enrichment anaylsis
☆14Oct 24, 2025Updated 8 months ago
Alternatives and similar repositories for ocean
Users that are interested in ocean are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆22Jun 10, 2026Updated last month
- Instant Clue - Interactive Data Analysis☆21Apr 9, 2025Updated last year
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- ☆10Mar 11, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆16Oct 31, 2024Updated last year
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 11 months ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- public production version of sequin to share with the public☆11Jun 12, 2026Updated last month
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- ☆15Dec 9, 2019Updated 6 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆25Jul 11, 2021Updated 5 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 7 months ago
- ☆14Dec 7, 2021Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks☆17Mar 2, 2022Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- Learning cell communication from spatial graphs of cells☆120Jan 15, 2024Updated 2 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆15Jul 24, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- reverse gene expression score☆16Sep 8, 2023Updated 2 years ago
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Jul 3, 2024Updated 2 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 3 months ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- ☆16Jan 10, 2023Updated 3 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆67Jun 30, 2026Updated 3 weeks ago
- Computational identification of targets for CAR-T cell therapy in AML☆22Dec 25, 2022Updated 3 years ago
- Robust Integration of Single-Cell Cytometry Datasets☆36Apr 29, 2026Updated 2 months ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R client for the OmniPath web service☆170Apr 29, 2026Updated 2 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated last year
- Simple scVI implementation☆13Jul 13, 2026Updated last week
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆35Apr 17, 2023Updated 3 years ago
- Share Apache Arrow datasets between Python and R.☆19Mar 4, 2026Updated 4 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆13Mar 3, 2023Updated 3 years ago