☆12Nov 18, 2024Updated last year
Alternatives and similar repositories for rockfish
Users that are interested in rockfish are comparing it to the libraries listed below
Sorting:
- ☆10Mar 11, 2025Updated last year
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 6 months ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 2 years ago
- ☆19Mar 31, 2025Updated 11 months ago
- fork of dorado that supports S/BLOW5☆12Jan 8, 2026Updated 2 months ago
- ☆20Oct 5, 2022Updated 3 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Oct 13, 2025Updated 5 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆241Feb 3, 2026Updated last month
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Dec 21, 2022Updated 3 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- R script for visualising patient ward movements as timelines☆13May 13, 2022Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- A simple toolkit for manipulating nanopore signal data☆19Updated this week
- RiboNucleic Acid (RNA) Language Model☆160Oct 3, 2025Updated 5 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 2 months ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- ☆23Dec 12, 2025Updated 3 months ago
- Some useful gadgets☆11Mar 14, 2022Updated 4 years ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 3 months ago
- ☆30Dec 22, 2023Updated 2 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 4 years ago
- ☆84Mar 3, 2025Updated last year
- chloroplast genome assembly using long reads data☆15Jul 8, 2025Updated 8 months ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- GWAS analysis process based on EMMAX software☆18Dec 12, 2023Updated 2 years ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Jan 3, 2025Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Learning to untangle genome assembly with graph neural networks.☆72Nov 17, 2024Updated last year
- A repo for my miscellaneous codes☆11Dec 21, 2016Updated 9 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Mar 11, 2019Updated 7 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- ☆82Feb 22, 2022Updated 4 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- ☆16Apr 9, 2021Updated 4 years ago
- bioinfo workflow based on snakemake☆14Feb 22, 2024Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Nov 8, 2023Updated 2 years ago