Alternatives and similar repositories for MultiplexNanopore:

Users that are interested in MultiplexNanopore are comparing it to the libraries listed below

• bartongroup / differr_nanopore_DRS
  Scripts for identifying sites with differential error rates in mapped nanopore DRS data
  ☆11Updated 4 years ago
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆12Updated 3 years ago
• fmfi-compbio / warpstr
  Determining tandem repeat lengths using raw nanopore signals.
  ☆13Updated last year
• joshidhaivat / QAlign
  ☆9Updated 3 years ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆14Updated last year
• welch-lab / SquiggleNet
  ☆20Updated 2 years ago
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated last year
• Benson-Genomics-Lab / IRF
  Inverted Repeats Finder: a program to analyze DNA and RNA sequences
  ☆13Updated last year
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆25Updated last year
• aziele / pfam_scan
  A tool for scanning FASTA protein sequences against a library of Pfam HMMs
  ☆13Updated 2 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆34Updated 2 weeks ago
• phac-nml / gview-wiki
  The gview wiki migrated to GitHub.
  ☆10Updated 4 years ago
• lrslab / Giraffe_View
  Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.
  ☆11Updated 4 months ago
• KleistLab / NanoPore_dRNASeq
  Codes and results from ONT dRNA benchmarking
  ☆11Updated last year
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆31Updated 8 months ago
• ChrisCreevey / clann
  Clann: constructing consensus trees and supertrees from multiple source trees
  ☆15Updated 3 years ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• comprna / radian
  Nanopore direct RNA basecaller
  ☆11Updated 2 years ago
• nluhmann / BlastFrost
  ☆45Updated 3 years ago
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 6 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆22Updated 8 months ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated last year
• kantorlab / hivmmer
  Alignment and variant-calling pipeline for Illumina HIV sequences.
  ☆11Updated 4 years ago
• torkian / blast-QC
  A Quality Control filter and parser for NCBI BLAST XML results.
  ☆16Updated 4 years ago
• TheSEED / RASTtk-Distribution
  KBase distribution module for RASTtk.
  ☆13Updated 4 years ago
• NicolaDM / phastSim
  fast sequence evolution simulation for SARS-CoV-2 and similar
  ☆17Updated 5 months ago
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆11Updated 2 months ago
• DNKonanov / Snapper
  snapper
  ☆14Updated 6 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 4 years ago