MasaakiU / MultiplexNanopore
☆10Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for MultiplexNanopore
- ☆9Updated 2 years ago
- interactive Multi Objective K-mer Analysis☆23Updated last year
- Nanopore UMI-linked consensus sequencing☆12Updated 3 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 3 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Updated 4 months ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 6 months ago
- Determining tandem repeat lengths using raw nanopore signals.☆12Updated last year
- ☆20Updated 2 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆9Updated 3 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 4 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 6 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated 9 months ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆11Updated 2 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 6 months ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆12Updated last year
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- Convert genbank files to a swath of other formats☆14Updated last year
- Analyse RNA feature distributions.☆15Updated 2 weeks ago
- ☆17Updated 5 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Find Unique genomic Regions☆29Updated this week
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆12Updated 2 months ago
- Digenome-toolkit ver2.☆15Updated 3 years ago
- ☆10Updated 2 months ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆19Updated 2 years ago
- ☆29Updated this week
- Annotating principal splice isoforms☆14Updated last month
- Automatically design multiplex PCR primer pairs for diverse templates☆22Updated 6 months ago
- Generating UTRs from SHort Reads☆11Updated 4 years ago