HLee-Six / colon_microbiopsiesLinks
Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"
☆11Updated 4 years ago
Alternatives and similar repositories for colon_microbiopsies
Users that are interested in colon_microbiopsies are comparing it to the libraries listed below
Sorting:
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- ☆16Updated 3 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated last month
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- omics data analysis using clusterProfiler ;)☆15Updated last year
- ☆10Updated 3 years ago
- ☆17Updated last year
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 5 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Updated 5 years ago
- CircRNA testing and ploting R package☆10Updated 5 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- ☆23Updated 4 years ago
- Integrated workflow for SV calling from single-cell Strand-seq data☆24Updated 8 months ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 2 years ago
- ☆11Updated 2 years ago
- ☆11Updated 7 years ago
- TRUST4 manuscript evaluation☆16Updated 3 years ago
- Transcriptome-wide network☆16Updated 6 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.