sandberg-lab / NASC-seqLinks
Code and analysis pipeline for NASC-seq.
☆11Updated 3 years ago
Alternatives and similar repositories for NASC-seq
Users that are interested in NASC-seq are comparing it to the libraries listed below
Sorting:
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- ☆11Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- ☆19Updated 2 years ago
- ☆16Updated 3 years ago
- A python package for chromVAR☆28Updated 2 years ago
- ☆49Updated 10 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 5 months ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated last year
- Benchmarking long-read RNA-seq analysis tools☆27Updated 4 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated last year
- ☆17Updated last year
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 5 years ago
- Paired-seq☆14Updated 11 months ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated 3 weeks ago
- ☆12Updated 4 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆19Updated 3 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- scGRO-seq analyses codes☆13Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- Perturb-seq analysis package☆14Updated last year
- ☆17Updated 2 years ago
- ☆12Updated 4 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month