sandberg-lab / NASC-seqLinks
Code and analysis pipeline for NASC-seq.
☆11Updated 3 years ago
Alternatives and similar repositories for NASC-seq
Users that are interested in NASC-seq are comparing it to the libraries listed below
Sorting:
- Paired-seq☆14Updated last year
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- ☆19Updated 2 years ago
- ☆10Updated 3 years ago
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆27Updated last month
- ☆18Updated 4 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 4 years ago
- ☆16Updated last year
- ☆12Updated 4 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆10Updated last year
- Benchmarking long-read RNA-seq analysis tools☆27Updated 7 months ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Updated 5 years ago
- Single-cell Iso Prep☆17Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- TRUST4 manuscript evaluation☆15Updated 3 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 8 months ago
- ☆20Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 4 months ago
- A python package for chromVAR☆30Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- https://molecular-neurogenetics.github.io/truster/☆11Updated 2 months ago
- ☆12Updated 4 years ago
- Pipeline for designing custom probes against human genes☆18Updated 11 months ago