pinellolab / simbaLinks
SIMBA: SIngle-cell eMBedding Along with features
☆61Updated 7 months ago
Alternatives and similar repositories for simba
Users that are interested in simba are comparing it to the libraries listed below
Sorting:
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆65Updated 2 years ago
- ☆58Updated 8 months ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- ☆27Updated 4 years ago
- Single cell omics biology annotations☆51Updated last month
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆95Updated 2 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆59Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆77Updated 3 weeks ago
- ☆36Updated this week
- ☆30Updated last month
- ☆32Updated 3 weeks ago
- ☆42Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year
- ☆23Updated 3 weeks ago
- ACTIONet single-cell analysis framework☆41Updated 8 months ago
- ☆47Updated last year
- Gene group activity utility functions for Scanpy☆76Updated 5 months ago
- Must-read papers on deep learning based methodology paper for single cell data analysis☆18Updated 4 years ago
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- ☆26Updated last week
- ☆42Updated 2 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆110Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆19Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆37Updated 3 weeks ago
- ☆106Updated 3 weeks ago
- cTPnet Package☆25Updated 2 years ago
- ☆45Updated 2 years ago