SIMBA: SIngle-cell eMBedding Along with features
☆66Oct 16, 2024Updated last year
Alternatives and similar repositories for simba
Users that are interested in simba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SIMBA: SIngle-cell eMBedding Along with features☆20Jan 6, 2026Updated 7 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- ☆40Jun 24, 2025Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆69Jul 8, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- python API to the CoGAPS NMF package☆22Jul 24, 2026Updated 2 weeks ago
- Multi-omic velocity inference☆120Oct 23, 2024Updated last year
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆19Oct 10, 2024Updated last year
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆16Mar 23, 2024Updated 2 years ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Jul 2, 2026Updated last month
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆262Jan 16, 2026Updated 6 months ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Updated this week
- ☆68Sep 13, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Consensus peaks of chromatin accessibility in the human genome☆18Dec 1, 2025Updated 8 months ago
- trajectory inference☆109Jan 27, 2025Updated last year
- ☆23Apr 30, 2025Updated last year
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated last month
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆88Mar 20, 2025Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Tutorials on using latest dynamo package☆27Jul 1, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Graph-linked unified embedding for single-cell multi-omics data integration☆474Feb 9, 2026Updated 6 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Jan 22, 2020Updated 6 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆410Jun 16, 2026Updated last month
- ☆24Jun 30, 2026Updated last month
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆78Jun 10, 2026Updated 2 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Single-cell epigenomics analysis tools☆324Aug 4, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.