Alternatives and similar repositories for SANGO

Users that are interested in SANGO are comparing it to the libraries listed below

• WanluLiuLab / scAtlasVAE
  ☆37Updated last month
• GreenleafLab / scScalpChromatin
  ☆27Updated last year
• ejarmand / comparative_epigenomic_motor_cortex
  ☆10Updated 8 months ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆25Updated 2 months ago
• snehamitra / SCARlink
  ☆55Updated last month
• BernsteinLab / Myeloid-Glioma
  Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments
  ☆18Updated 2 months ago
• ChengxiangQiu / tome_code
  The scripts used for the analyses in TOME project
  ☆25Updated 8 months ago
• immunogenomics / TiRP
  code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…
  ☆13Updated 6 months ago
• mcgilldinglab / UNAGI
  Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
  ☆27Updated last month
• epigen / dea_seurat
  A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…
  ☆23Updated last month
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 9 months ago
• theislab / cellrank2_reproducibility
  CellRank 2's reproducibility repository.
  ☆11Updated 11 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 7 months ago
• jeongdo801 / scNOVA
  scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
  ☆11Updated 2 years ago
• RebuffetLucas / Meta_NK_Project
  ☆10Updated 3 weeks ago
• KellisLab / AD_regulome_analysis
  AD regulome analysis
  ☆12Updated 2 years ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆21Updated last year
• guokai8 / rcellmarker
  Identify cell type based on cell markers for single cell squencing
  ☆11Updated last year
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• wenweixiong / MARVEL
  ☆49Updated last year
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• AllenInstitute / mouse_aging_scRNAseq
  analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain
  ☆19Updated last year
• RegnerM2015 / scBreast_scRNA_scATAC_2024
  Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …
  ☆17Updated 2 months ago
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆25Updated 11 months ago
• xmuhuanglab / eNet
  ☆12Updated 2 years ago