A repository for benchmarking spatial deconvolution and mapping tools
☆37May 13, 2025Updated last year
Alternatives and similar repositories for spotless-benchmark
Users that are interested in spotless-benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Jun 30, 2026Updated 2 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Updated this week
- Visualising data frames as funky heatmaps 📊, the Python implementation☆27Feb 6, 2025Updated last year
- ☆56Updated this week
- Using self-organizing maps for visualization and interpretation of cytometry data☆36Jul 23, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆18Jan 1, 2026Updated 8 months ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 5 years ago
- Peak-based selection of high quality cytometry data☆22Feb 23, 2026Updated 6 months ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆17Updated this week
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- Python package to interactively annotate histological images within a jupyter notebook☆19Oct 20, 2025Updated 10 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Updated this week
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- NicheNet: predict active ligand-target links between interacting cells☆674Jun 1, 2026Updated 3 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Dec 1, 2025Updated 9 months ago
- From geospatial to spatial -omics☆103Jul 24, 2026Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆196Aug 12, 2025Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆49Feb 25, 2024Updated 2 years ago
- ☆62Jul 12, 2026Updated last month
- ☆40Jun 24, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆89Oct 6, 2023Updated 2 years ago
- AnnData interoperability in R☆195Updated this week
- Spatially-aware quality control for spatial transcriptomics☆17Oct 22, 2025Updated 10 months ago
- Cell type purification by single-cell transcriptome-trained sorting☆16Jul 8, 2019Updated 7 years ago
- A tool for semi-automatic cell type classification☆502May 22, 2026Updated 3 months ago
- CiteFuse:☆29Feb 7, 2023Updated 3 years ago
- ☆14Feb 21, 2023Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆36Feb 28, 2022Updated 4 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆482Jan 22, 2026Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆37Jul 23, 2026Updated last month
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- Documentation☆20Aug 28, 2026Updated last week
- methylR: a single shiny solution from sequencer data to pathway analysis☆13Oct 30, 2024Updated last year
- ☆22Apr 16, 2024Updated 2 years ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆47Jul 8, 2026Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year