KANG-BIOINFO / CellDriftView external linksLinks
CellDrift: temporal perturbation effects for single cell data
☆13Dec 3, 2022Updated 3 years ago
Alternatives and similar repositories for CellDrift
Users that are interested in CellDrift are comparing it to the libraries listed below
Sorting:
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆134Aug 14, 2024Updated last year
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated 9 months ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jan 15, 2024Updated 2 years ago
- This repository implements the winning solution for the single cell perturbation problems☆15Dec 22, 2023Updated 2 years ago
- ☆15Jul 8, 2022Updated 3 years ago
- ☆18Apr 30, 2025Updated 9 months ago
- Conditional out-of-distribution prediction☆62Aug 2, 2024Updated last year
- scVI extension for unspliced RNA☆16May 18, 2025Updated 8 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Jul 7, 2022Updated 3 years ago
- ☆22Jan 10, 2025Updated last year
- Learning disentangled representations of single-cell data for high-quality generation☆16Mar 16, 2024Updated last year
- ☆16Jan 14, 2026Updated last month
- Tool for modelling of mitochondrial heteroplasmy☆20Jul 16, 2024Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 7 months ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆18Feb 17, 2021Updated 4 years ago
- ☆17Jul 8, 2024Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- ☆20Feb 28, 2025Updated 11 months ago
- ☆25Apr 8, 2025Updated 10 months ago
- Multi-omic velocity inference☆116Oct 23, 2024Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆327Jan 12, 2026Updated last month
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆145Feb 6, 2025Updated last year
- inferring regulatory cellular dynamics☆63Jan 13, 2026Updated last month
- ☆45Jan 11, 2024Updated 2 years ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Updated this week
- ☆90Aug 12, 2024Updated last year
- RNA velocity validation☆22Mar 16, 2022Updated 3 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆52Feb 12, 2025Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆24Feb 4, 2026Updated last week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆166Feb 25, 2025Updated 11 months ago
- This is the alpha version of the CellOracle package☆416Feb 3, 2026Updated last week
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Nov 21, 2025Updated 2 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jun 6, 2025Updated 8 months ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- ☆60Apr 5, 2024Updated last year
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆100Sep 9, 2025Updated 5 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Dec 2, 2025Updated 2 months ago
- ☆25Oct 9, 2020Updated 5 years ago