CellDrift: temporal perturbation effects for single cell data
☆13Dec 3, 2022Updated 3 years ago
Alternatives and similar repositories for CellDrift
Users that are interested in CellDrift are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository implements the winning solution for the single cell perturbation problems☆15Dec 22, 2023Updated 2 years ago
- Learning disentangled representations of single-cell data for high-quality generation☆16Mar 16, 2024Updated 2 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆56Feb 18, 2026Updated 5 months ago
- ☆15Jul 8, 2022Updated 4 years ago
- ☆17Jul 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysi…☆17Updated this week
- Notebooks for CPA figures☆15Dec 9, 2022Updated 3 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆18Feb 17, 2021Updated 5 years ago
- physics-informed neural network based method for solving single-cell population dynamics☆17Jun 23, 2026Updated 3 weeks ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jul 6, 2026Updated 2 weeks ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Nov 21, 2019Updated 6 years ago
- Tool for modelling of mitochondrial heteroplasmy☆21Jul 16, 2024Updated 2 years ago
- Spatiotemporal modeling of spatial transcriptomics☆342Feb 25, 2026Updated 4 months ago
- Tutorials for Squidpy☆35Jul 10, 2026Updated last week
- Conditional out-of-distribution prediction☆64Aug 2, 2024Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆149Aug 14, 2024Updated last year
- Multi-omic velocity inference☆120Oct 23, 2024Updated last year
- ☆47Jan 11, 2024Updated 2 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆156Feb 6, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆23Jun 30, 2026Updated 3 weeks ago
- A Toolkit for Single Cell Spatiotemporal Dynamical Generative Modeling☆17Jun 30, 2026Updated 3 weeks ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆186Sep 7, 2023Updated 2 years ago
- This is the alpha version of the CellOracle package☆478Apr 30, 2026Updated 2 months ago
- ☆11Dec 8, 2023Updated 2 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 4 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆183Feb 25, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆62Apr 5, 2024Updated 2 years ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆29Nov 6, 2025Updated 8 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆27Mar 9, 2026Updated 4 months ago
- This sample code demonstrates how to build an Amazon SageMaker environment for HPO using Optuna (an open source hyperparameter tuning fra…☆11May 21, 2024Updated 2 years ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆176Oct 31, 2024Updated last year
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- TARDIS: Topological Algorithms for Robust DIscovery of Singularities☆44Jul 28, 2023Updated 2 years ago