CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
☆19Apr 19, 2019Updated 7 years ago
Alternatives and similar repositories for CloudNeo
Users that are interested in CloudNeo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Feb 20, 2018Updated 8 years ago
- ☆10Sep 14, 2023Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Java SDK for the Common Workflow Language standards☆15Jun 19, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17May 5, 2026Updated last month
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- Ninja Is Not Just Another OTU Picking Solution☆22Apr 23, 2018Updated 8 years ago
- ☆35Sep 28, 2020Updated 5 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Aug 29, 2022Updated 3 years ago
- Admiral Package Extension for Pediatric Clinical Trials☆14Updated this week
- Curriculum Vitae☆14May 8, 2026Updated last month
- Seven Bridges Python library for programatic generation of CWL workflows.☆21Apr 13, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- cfDNA Sequencing Pipeline with UMI☆11Jun 11, 2026Updated 3 weeks ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Skype for Business Android Uri Sample☆10Aug 22, 2019Updated 6 years ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Aug 9, 2016Updated 9 years ago
- ☆21Mar 20, 2022Updated 4 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Clotho☆11Jul 14, 2015Updated 10 years ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Jul 22, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆23Sep 4, 2018Updated 7 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆36Aug 9, 2019Updated 6 years ago
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 9 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆45Mar 25, 2023Updated 3 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆63Jun 20, 2026Updated 2 weeks ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Development Tools for the admiral family☆22Jun 10, 2026Updated 3 weeks ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 8 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- Precision HLA typing from next-generation sequencing data☆219May 20, 2026Updated last month
- Python package and command line tool for epitope prediction☆54Aug 2, 2024Updated last year
- Manager for multi-container computing environments☆26Mar 6, 2026Updated 3 months ago
- TileDB☆79Jun 12, 2023Updated 3 years ago
- viewtab, csvsql, and a range of utility classes for ML and data analysis.☆34Sep 21, 2022Updated 3 years ago
- ☆12Nov 21, 2023Updated 2 years ago