TheJacksonLaboratory / CloudNeoLinks
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
☆19Updated 6 years ago
Alternatives and similar repositories for CloudNeo
Users that are interested in CloudNeo are comparing it to the libraries listed below
Sorting:
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Mutation Spectra Analysis☆10Updated 7 years ago
- ☆35Updated 5 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 7 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- CWL tools and workflows for GGR☆22Updated 3 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- ☆25Updated 4 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Website to analyze conflicting assertions in ClinVar☆19Updated last year
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated this week
- a R package to identify neoantigens from NGS data☆19Updated 8 years ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆25Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- ☆29Updated 4 years ago