TheJacksonLaboratory / CloudNeo
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
☆19Updated 5 years ago
Alternatives and similar repositories for CloudNeo:
Users that are interested in CloudNeo are comparing it to the libraries listed below
- ☆23Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 4 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- ☆19Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Updated 2 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 7 years ago
- ☆30Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆16Updated 9 months ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 7 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago