TheJacksonLaboratory / CloudNeoLinks
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
☆19Updated 6 years ago
Alternatives and similar repositories for CloudNeo
Users that are interested in CloudNeo are comparing it to the libraries listed below
Sorting:
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- ☆29Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 9 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆20Updated 3 years ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆25Updated 2 years ago
- ☆25Updated 4 years ago
- Mutation Spectra Analysis☆10Updated 7 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Website to analyze conflicting assertions in ClinVar☆18Updated last year
- Barcoded Molecular Families☆22Updated 7 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 10 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆63Updated 9 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago