CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
☆19Apr 19, 2019Updated 6 years ago
Alternatives and similar repositories for CloudNeo
Users that are interested in CloudNeo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Feb 20, 2018Updated 8 years ago
- ☆10Sep 14, 2023Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Java SDK for the Common Workflow Language standards☆15Feb 23, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17Nov 3, 2025Updated 4 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Nov 14, 2021Updated 4 years ago
- Ninja Is Not Just Another OTU Picking Solution☆22Apr 23, 2018Updated 7 years ago
- ☆35Sep 28, 2020Updated 5 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Aug 29, 2022Updated 3 years ago
- Admiral Package Extension for Pediatric Clinical Trials☆14Mar 5, 2026Updated 2 weeks ago
- Curriculum Vitae☆14Jan 21, 2026Updated 2 months ago
- Seven Bridges Python library for programatic generation of CWL workflows.☆21Oct 26, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- cfDNA Sequencing Pipeline with UMI☆11Dec 8, 2025Updated 3 months ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Aug 9, 2016Updated 9 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- ☆20Mar 20, 2022Updated 4 years ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 4 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆61Mar 17, 2026Updated last week
- ☆23Sep 4, 2018Updated 7 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆35Aug 9, 2019Updated 6 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 8 years ago
- A translator from WDL to CWL v1.2☆27Jan 19, 2026Updated 2 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- ☆171Updated this week
- Development Tools for the admiral family☆21Updated this week
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 8 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- Precision HLA typing from next-generation sequencing data☆213Mar 3, 2026Updated 3 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python package and command line tool for epitope prediction☆53Aug 2, 2024Updated last year
- Manager for multi-container computing environments☆26Mar 6, 2026Updated 2 weeks ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Mar 17, 2026Updated last week
- TileDB☆79Jun 12, 2023Updated 2 years ago
- viewtab, csvsql, and a range of utility classes for ML and data analysis.☆34Sep 21, 2022Updated 3 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago