QBRC Neoantigen calling pipeline with CSiN calculation embedded
☆26Feb 8, 2022Updated 4 years ago
Alternatives and similar repositories for QBRC-Neoantigen-Pipeline
Users that are interested in QBRC-Neoantigen-Pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- QBRC Somatic Mutation Calling Pipeline☆16Feb 8, 2022Updated 4 years ago
- ☆13Aug 14, 2020Updated 6 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆93Jun 14, 2022Updated 4 years ago
- ☆22May 28, 2026Updated 2 months ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated last month
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆39Nov 14, 2021Updated 4 years ago
- GLASS consortium☆14May 31, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- ☆13Nov 21, 2023Updated 2 years ago
- Python package and command line tool for epitope prediction☆54Aug 2, 2024Updated 2 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆39Oct 7, 2020Updated 5 years ago
- a pipeline for quantification of circular RNA.☆14May 7, 2017Updated 9 years ago
- Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire (mirror, please go to http://gitlab.vidjil.org)☆32Jun 29, 2026Updated last month
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 7 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆15Jun 10, 2026Updated 2 months ago
- High-throughput mapping and domain partitioning of antigen receptor sequences☆56Updated this week
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 4 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Scalable genomic analysis pipelines, written in WDL☆12Updated this week
- ☆19Jul 25, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Git repo for CONIPHER tree building☆27Mar 20, 2025Updated last year
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- Snakemake-based computational workflow for neoantigen prediction from diverse sources☆19Jul 6, 2026Updated last month
- A Tidy Framework to Hack Gene Expression Signatures☆20Apr 20, 2025Updated last year
- ☆39Aug 7, 2026Updated last week
- xHLA: Fast and accurate HLA typing from short read sequence data☆117Oct 13, 2023Updated 2 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆55Feb 18, 2026Updated 6 months ago