tianshilu / QBRC-Neoantigen-Pipeline
QBRC Neoantigen calling pipeline with CSiN calculation embedded
☆24Updated 3 years ago
Alternatives and similar repositories for QBRC-Neoantigen-Pipeline:
Users that are interested in QBRC-Neoantigen-Pipeline are comparing it to the libraries listed below
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆17Updated 3 weeks ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- ☆47Updated 3 months ago
- binned motif enrichment analysis and visualisation☆40Updated this week
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- ☆49Updated 9 months ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆14Updated 9 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆26Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 3 years ago
- ☆30Updated 2 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆15Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- ☆47Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- ☆13Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year