Snakemake workflow for somatic mutation detection without matched normal samples
☆13Mar 4, 2023Updated 3 years ago
Alternatives and similar repositories for TOSCA
Users that are interested in TOSCA are comparing it to the libraries listed below
Sorting:
- Tumor Mutational Burden☆65Feb 17, 2026Updated 2 weeks ago
- ☆11Apr 3, 2023Updated 2 years ago
- ☆12Sep 4, 2022Updated 3 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- Development repository for the multiMiR database's R API☆22Aug 28, 2024Updated last year
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Jun 29, 2021Updated 4 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Apr 5, 2023Updated 2 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Jul 15, 2021Updated 4 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Dec 21, 2022Updated 3 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆27Apr 4, 2023Updated 2 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Mar 9, 2023Updated 2 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆72Jun 26, 2023Updated 2 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Aug 29, 2022Updated 3 years ago
- ☆120Sep 5, 2023Updated 2 years ago
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆10Feb 24, 2026Updated last week
- Workspace for data science projects and NGS pipelines. Contains RStudio, Jupyter Notebook, VSCode and file manager. Can connect to Tailsc…☆10Aug 25, 2023Updated 2 years ago
- Dockstore implementation of CGP core WGS analysis☆30Jun 8, 2020Updated 5 years ago
- Gene fusion detection and visualization☆131Feb 21, 2022Updated 4 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Sep 9, 2025Updated 5 months ago
- Cellsnake tool main repo☆36Feb 22, 2024Updated 2 years ago
- MirMachine, a command line tool to detect microRNA homologs in genome sequences.☆13Dec 3, 2025Updated 3 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Sep 16, 2025Updated 5 months ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- A pure Rust library to get raw data of Ethereum-style blockies (for saving blockies icon images, printing to terminal, ...)☆13Jul 2, 2023Updated 2 years ago
- Crossmapped phenotype ontologies for the oncology domain☆13Feb 16, 2026Updated 2 weeks ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated last year
- R functions underlying ExpressAnalyst☆13Feb 7, 2026Updated 3 weeks ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- ☆11Feb 3, 2026Updated last month
- 一款浏览器插件，支持在各种论文网站显示会议、期刊等级。支持的排名有：西南财经大学swufe，中央财经大学cufe，复旦大学fdu，上海交通大学sjtu，西南交通大学swjtu，对外经济贸易大学uibe，西安电子科技大学xdu，SCI，SCI影响因子，中国科学引文数据库csc…☆12Dec 16, 2021Updated 4 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆13Mar 10, 2023Updated 2 years ago