mdelcorvo / TOSCALinks
Snakemake workflow for somatic mutation detection without matched normal samples
☆13Updated 2 years ago
Alternatives and similar repositories for TOSCA
Users that are interested in TOSCA are comparing it to the libraries listed below
Sorting:
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Updated 4 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- Tumor Mutational Burden☆64Updated last week
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 3 weeks ago
- MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆42Updated last year
- cnv-seq with custom bugfix☆10Updated 12 years ago
- MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data☆23Updated 11 months ago
- Comprehensive analysis of small RNA sequencing data☆35Updated 8 months ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆29Updated 5 years ago
- Clinical interpretation of somatic mutations in cancer☆50Updated 11 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 10 months ago
- A flexible framework for nucleosome profiling of cell-free DNA☆29Updated 2 years ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- ☆31Updated last year
- ☆38Updated 5 years ago
- ☆25Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Fork of the Polysolver project☆33Updated 6 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- ☆19Updated 7 years ago
- ☆11Updated 7 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆75Updated 3 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆77Updated this week
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Updated 3 years ago
- Collection of fragmentomic analysis scripts☆12Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆76Updated 3 years ago