vanallenlab / retained-intron-neoantigen-pipelineLinks
Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
☆29Updated 4 years ago
Alternatives and similar repositories for retained-intron-neoantigen-pipeline
Users that are interested in retained-intron-neoantigen-pipeline are comparing it to the libraries listed below
Sorting:
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 3 years ago
- ☆19Updated 7 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Updated 3 years ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 2 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 10 months ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Updated 2 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 7 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- ☆23Updated 4 years ago
- Visualization tool for temporal clonal evolution.☆18Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 2 months ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- RAGE-seq scripts☆18Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago