TRON-Bioinformatics / EasyFuseLinks
EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
☆62Updated last month
Alternatives and similar repositories for EasyFuse
Users that are interested in EasyFuse are comparing it to the libraries listed below
Sorting:
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- ☆59Updated 4 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 10 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated 2 weeks ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated last month
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆55Updated 6 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- An R package to time somatic mutations☆65Updated 4 years ago
- A list of alternative splicing analysis resources☆46Updated 8 months ago
- ☆72Updated 2 years ago
- Fork of the Polysolver project☆33Updated 6 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 4 months ago
- ☆39Updated 5 years ago
- RNA editing quantification in deep transcriptome data☆16Updated 4 months ago
- RNA editing tests☆17Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- RiboPlotR package for Ribo-plot☆15Updated 5 months ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Updated 7 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆81Updated 6 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Updated 3 years ago
- ☆20Updated 6 years ago
- A continually expanding collection of RNA-seq tools☆53Updated 2 months ago