TRON-Bioinformatics / EasyFuseLinks
EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
☆62Updated 2 months ago
Alternatives and similar repositories for EasyFuse
Users that are interested in EasyFuse are comparing it to the libraries listed below
Sorting:
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆81Updated 6 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- An R package to time somatic mutations☆65Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Updated last month
- A list of alternative splicing analysis resources☆46Updated 9 months ago
- ☆24Updated this week
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 2 months ago
- ☆72Updated 2 years ago
- ☆38Updated 5 years ago
- RNA editing quantification in deep transcriptome data☆16Updated 5 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 5 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 7 months ago
- ☆60Updated 5 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- Python package to annotate and visualize gene fusions.☆65Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 11 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- RNA editing tests☆17Updated 5 years ago