ylab-hi / ScanExitronLinks
A computational workflow for exitron splicing identification
☆12Updated 9 months ago
Alternatives and similar repositories for ScanExitron
Users that are interested in ScanExitron are comparing it to the libraries listed below
Sorting:
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A list of alternative splicing analysis resources☆44Updated 2 months ago
- Fork of the Polysolver project☆31Updated 5 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Quantitation and visualization of differential alternative splicing events☆10Updated 2 years ago
- ☆17Updated 6 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- RiboPlotR package for Ribo-plot☆15Updated last week
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆30Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆13Updated 7 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- Tutorial Website☆59Updated 4 years ago
- Assessing the reproducibility of proccessed ChIP-seq peaks☆12Updated 4 years ago