A computational workflow for exitron splicing identification
☆16Jul 17, 2026Updated 3 weeks ago
Alternatives and similar repositories for ScanExitron
Users that are interested in ScanExitron are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 14, 2020Updated 5 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Jul 17, 2026Updated 3 weeks ago
- Junction centric alternative splicing translator☆22May 22, 2026Updated 2 months ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 3 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- ☆22May 28, 2026Updated 2 months ago
- ☆17Jul 19, 2024Updated 2 years ago
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆95Apr 29, 2026Updated 3 months ago
- Analysis pipelines for cancer genome sequencing in mice.☆23Jun 19, 2026Updated last month
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Jan 18, 2021Updated 5 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- tools to find circRNAs in RNA-seq data☆47Nov 16, 2017Updated 8 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆24Apr 10, 2025Updated last year
- Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical pro…☆21Apr 28, 2023Updated 3 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 6 years ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆17Jul 23, 2019Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆26May 10, 2025Updated last year
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆80Apr 1, 2023Updated 3 years ago
- iread☆26Jul 16, 2021Updated 5 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆114Apr 13, 2026Updated 3 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆69Updated this week
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Junction Based Analysis of Splicing Events for RNA-Seq☆35Apr 3, 2026Updated 4 months ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Sep 17, 2021Updated 4 years ago
- Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif☆10Aug 13, 2025Updated 11 months ago
- Emending Alignment of Spliced Transcript Reads☆12Jan 19, 2026Updated 6 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- Sample-specific CircRNA Viewer☆11Aug 15, 2018Updated 7 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆42Dec 16, 2025Updated 7 months ago