Alternatives and similar repositories for SNAF:

Users that are interested in SNAF are comparing it to the libraries listed below

• CFeregrino / scWGCNA
  scWGCNA
  ☆56Updated 2 years ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated last week
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆67Updated last month
• McGranahanLab / TcellExTRECT
  ☆46Updated last month
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 3 years ago
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆42Updated 5 months ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆41Updated last year
• KChen-lab / METAFlux
  ☆57Updated 7 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆35Updated last year
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆53Updated last year
• BIMSBbioinfo / ikarus
  Identifying tumor cells at the single-cell level using machine learning
  ☆47Updated 3 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆59Updated 3 weeks ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆51Updated last year
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆29Updated 2 years ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 3 months ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 4 years ago
• ernstlab / full_stack_ChromHMM_annotations
  Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
  ☆32Updated 7 months ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆43Updated last month
• wenweixiong / MARVEL
  ☆45Updated 6 months ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 5 years ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆51Updated last week
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆45Updated 11 months ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆38Updated 4 months ago
• hukai916 / scATACpipe
  ☆26Updated 3 months ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆18Updated last month
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆69Updated 9 months ago
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago