Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation
☆56Feb 18, 2026Updated 5 months ago
Alternatives and similar repositories for SNAF
Users that are interested in SNAF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake-based computational workflow for neoantigen prediction from diverse sources☆19Jul 6, 2026Updated 2 weeks ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆30Aug 20, 2024Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated 3 weeks ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆104Jul 7, 2022Updated 4 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆15Jun 10, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆93Jun 6, 2025Updated last year
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated 3 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Jan 18, 2021Updated 5 years ago
- ☆12Nov 21, 2023Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆80Apr 1, 2023Updated 3 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- ☆13Aug 14, 2020Updated 5 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆23Apr 10, 2025Updated last year
- ☆19May 31, 2024Updated 2 years ago
- ☆95Aug 29, 2025Updated 10 months ago
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆13Sep 30, 2024Updated last year
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated 2 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆93Jun 14, 2022Updated 4 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 7 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆70Jul 10, 2026Updated last week
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 8 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆114Apr 13, 2026Updated 3 months ago
- ☆24Jun 7, 2024Updated 2 years ago
- ☆20Oct 5, 2022Updated 3 years ago
- LongSom tool for long-reads☆12May 20, 2025Updated last year
- Multiple trajectory alignment of time-series data☆14Oct 14, 2023Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆67Dec 17, 2025Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Jul 1, 2026Updated 2 weeks ago
- ☆11Sep 17, 2020Updated 5 years ago
- Using combined evidence from replicates to evaluate ChIP-seq peaks☆21Mar 14, 2026Updated 4 months ago
- ☆23May 28, 2026Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- VirusScan Pipeline☆12Feb 7, 2026Updated 5 months ago