frankligy / SNAF
Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation
☆44Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for SNAF
- Molecular interactions inference from single-cell multi-omics data☆22Updated last week
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆40Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 2 years ago
- HLA-II ligand predictor.☆35Updated last year
- ☆48Updated 4 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆36Updated 2 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆15Updated this week
- ☆34Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Functional Inference of Gene Regulation☆36Updated 4 months ago
- A docker image for single-cell analysis☆66Updated 5 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆41Updated 2 months ago
- scWGCNA☆54Updated 2 years ago
- ☆46Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆61Updated 6 months ago
- R package for the analysis of single-cell immune repertoires☆41Updated 3 weeks ago
- TF analysis from epigenetic and Hi-C data☆17Updated this week
- Imputation method for scRNA-seq based on low-rank approximation☆73Updated 10 months ago
- ☆37Updated 4 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆43Updated 8 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆32Updated 4 months ago
- ☆25Updated 3 weeks ago
- This is the official repository for the Human Cell Atlas Heart project.☆28Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆34Updated last year
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- Using TCR and expression for sequence embedding☆48Updated last week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago