SigMa is a probabilistic model for the sequential dependencies of mutation signatures
☆17Jul 27, 2019Updated 6 years ago
Alternatives and similar repositories for sigma
Users that are interested in sigma are comparing it to the libraries listed below
Sorting:
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated last year
- MuSiCa - Mutational Signatures in Cancer☆23Dec 23, 2023Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Aug 29, 2022Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆41Jan 30, 2023Updated 3 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- Decomposition of heterogeneous DNA methylomes☆23Jul 10, 2024Updated last year
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Jul 4, 2024Updated last year
- Streaming assembly for MinION data☆25Dec 16, 2023Updated 2 years ago
- ☆16May 8, 2023Updated 2 years ago
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- ☆36Jul 28, 2019Updated 6 years ago
- A Julia package for extracting mutation signatures using topic models☆19Feb 23, 2022Updated 4 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 9 years ago
- Advanced R 1-day course taught at the University of Cambridge☆11Jul 6, 2018Updated 7 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- Subtyping tool for multi-omic data☆13Jul 6, 2022Updated 3 years ago
- Materials related to my talk "Pat Helland and Me"☆14Dec 24, 2019Updated 6 years ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 2 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 3 years ago
- ☆20Feb 24, 2017Updated 9 years ago
- Fast Bayesian Hidden Markov Model with Wavelet Compression☆17Jan 24, 2020Updated 6 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- ☆10Nov 4, 2021Updated 4 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- ☆13Jun 24, 2016Updated 9 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- software package for integrative genetic association analysis☆35Jul 8, 2023Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Apr 7, 2022Updated 3 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year