tianshilu / pMTnetLinks
Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
☆84Updated 3 years ago
Alternatives and similar repositories for pMTnet
Users that are interested in pMTnet are comparing it to the libraries listed below
Sorting:
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated 2 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆19Updated last week
- GeneCompass☆86Updated 2 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆78Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆85Updated 3 years ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆86Updated 2 weeks ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆55Updated 3 years ago
- ☆28Updated 4 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 3 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆44Updated last month
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 5 months ago
- ☆31Updated 6 months ago
- flexible CDR based distance metrics☆66Updated last year
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- ☆17Updated 4 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆65Updated last year
- ☆133Updated last year
- ☆43Updated last year
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Updated 4 years ago
- ☆36Updated 2 months ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆16Updated 2 years ago
- code to run sei and obtain sei and sequence class predictions☆108Updated 2 years ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆70Updated 2 years ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆102Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year