kkrismer / transiteLinks
RNA-binding protein motif analysis
☆11Updated last year
Alternatives and similar repositories for transite
Users that are interested in transite are comparing it to the libraries listed below
Sorting:
- Comprehensive and scalable differential splicing analyses☆17Updated 4 months ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆11Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- ☆22Updated last year
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- binned motif enrichment analysis and visualisation☆40Updated this week
- ☆17Updated last year
- ☆11Updated 2 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆14Updated 2 years ago
- ☆13Updated 9 years ago
- ☆23Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 6 months ago
- A single cell sequencing read simulator.☆33Updated 9 months ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- ☆15Updated 2 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 5 months ago
- Model-based analysis of APA using 3' end-linked reads☆10Updated 3 years ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆9Updated 3 weeks ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆20Updated last year
- a tool for summarizing and integrating gene-set analysis results☆16Updated 11 months ago
- Transcription Factor Enrichment Analysis☆34Updated last week
- An R package to process and analyze transcriptomic data☆17Updated 3 weeks ago