kkrismer / transiteLinks
RNA-binding protein motif analysis
☆10Updated 3 months ago
Alternatives and similar repositories for transite
Users that are interested in transite are comparing it to the libraries listed below
Sorting:
- Comprehensive and scalable differential splicing analyses☆17Updated 3 weeks ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆13Updated 3 weeks ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Updated 3 years ago
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- Transcription Factor Enrichment Analysis☆36Updated last month
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- ☆11Updated 3 years ago
- A network-based approach for exon set enrichment☆15Updated 5 months ago
- Improved Ribo-seq enables identification of cryptic translation events☆16Updated 7 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 11 months ago
- ☆23Updated 4 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 10 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- ☆18Updated last year
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆14Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- ☆14Updated 9 years ago
- ☆23Updated last year
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- ☆34Updated last month
- A single cell sequencing read simulator.☆33Updated last year
- Model-based analysis of APA using 3' end-linked reads☆11Updated 4 years ago
- simplified cellranger for long-read data☆19Updated 4 months ago