XSLiuLab / Seq2NeoLinks
Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
☆21Updated 2 years ago
Alternatives and similar repositories for Seq2Neo
Users that are interested in Seq2Neo are comparing it to the libraries listed below
Sorting:
- ☆20Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 5 months ago
- ☆49Updated 3 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 4 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆36Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆17Updated 11 months ago
- ☆19Updated last year
- PRedictor of IMmunogenic Epitopes☆24Updated 4 months ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Inference of TCR motifs☆32Updated 3 months ago
- ☆15Updated 3 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆23Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 5 months ago
- ☆24Updated last week
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 7 months ago
- R package for nucleotide conversion sequencing data analysis☆15Updated 7 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- ☆13Updated 5 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- documentation for trackViewer☆29Updated 6 years ago
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆26Updated 10 months ago