hliang / cnv-seq
cnv-seq with custom bugfix
☆10Updated 11 years ago
Alternatives and similar repositories for cnv-seq:
Users that are interested in cnv-seq are comparing it to the libraries listed below
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated this week
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- ☆19Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆23Updated 6 months ago
- ☆10Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Long read to rMATS☆31Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- ☆21Updated 2 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 8 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- ☆23Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆16Updated 5 years ago
- ☆20Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- ☆13Updated 7 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago