hliang / cnv-seqLinks
cnv-seq with custom bugfix
☆10Updated 12 years ago
Alternatives and similar repositories for cnv-seq
Users that are interested in cnv-seq are comparing it to the libraries listed below
Sorting:
- ☆19Updated 7 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 5 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 7 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ☆25Updated last year
- Microsatellite Analysis for Normal-Tumor InStability☆73Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆47Updated 4 months ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ☆46Updated 5 years ago
- ☆30Updated last year
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 5 months ago
- ☆53Updated 2 years ago
- ☆13Updated 7 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆22Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Updated 5 years ago