hliang / cnv-seqLinks
cnv-seq with custom bugfix
☆10Updated 12 years ago
Alternatives and similar repositories for cnv-seq
Users that are interested in cnv-seq are comparing it to the libraries listed below
Sorting:
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 3 years ago
- ☆19Updated 7 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Updated 4 months ago
- Long read to rMATS☆32Updated 2 years ago
- ☆26Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 3 weeks ago
- Fork of the Polysolver project☆33Updated 6 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆76Updated 3 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 months ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- ☆54Updated 3 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- QDNAseq package for Bioconductor☆54Updated last year
- Comprehensive analysis of small RNA sequencing data☆35Updated 8 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- HLA typing for Sanger Based Test☆19Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 11 months ago