vanallenlab / neoantigen_calling_pipelineLinks
Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA
☆13Updated 2 years ago
Alternatives and similar repositories for neoantigen_calling_pipeline
Users that are interested in neoantigen_calling_pipeline are comparing it to the libraries listed below
Sorting:
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Published at Bioinformatics☆12Updated last year
- ☆12Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Comprehensive Human Expressed SequenceS☆18Updated last week
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Scripts used in the analysis of C elegans dRNAseq data☆14Updated last year
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 5 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 5 years ago
- Whole genome workflows☆12Updated 8 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated 4 months ago
- A comprehensive gene set function enrichment tool for multiple species.☆13Updated 5 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆9Updated 3 years ago
- R Package for phasing of single cell Strand-seq data☆10Updated 6 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last week
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆9Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago