vanallenlab / neoantigen_calling_pipelineLinks
Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA
☆12Updated 2 years ago
Alternatives and similar repositories for neoantigen_calling_pipeline
Users that are interested in neoantigen_calling_pipeline are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Comprehensive Human Expressed SequenceS☆17Updated 10 months ago
- R Package for phasing of single cell Strand-seq data☆10Updated 4 months ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated last year
- ☆17Updated 10 months ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆21Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Long read to rMATS☆31Updated 2 years ago
- WES HLA Typing based on multiple alternative tools☆16Updated 4 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆17Updated last year
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated 2 years ago
- ☆23Updated 4 years ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 9 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- mitochondrial variant analysis tools☆14Updated 4 years ago
- ☆19Updated 7 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated 2 months ago
- ☆11Updated 4 years ago