Alternatives and similar repositories for AttentionPert

Users that are interested in AttentionPert are comparing it to the libraries listed below

• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer link prediction
  ☆42Updated last month
• BGIResearch / BioLLM
  ☆27Updated 6 months ago
• altoslabs / perturbench
  ☆56Updated last month
• const-ae / linear_perturbation_prediction-Paper
  ☆58Updated 4 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆64Updated 7 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆107Updated last month
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆119Updated this week
• theislab / scTab
  ☆61Updated last year
• bm2-lab / STAMP
  ☆14Updated 5 months ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆53Updated this week
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆56Updated this week
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆152Updated 8 months ago
• theislab / prophet
  ☆38Updated 2 weeks ago
• nceglia / genevector
  Vector representations of gene co-expression in single cell RNAseq.
  ☆36Updated last week
• mcgilldinglab / UNAGI
  UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
  ☆42Updated last week
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆59Updated last year
• biomed-AI / CellFM
  ☆85Updated 2 months ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆30Updated 3 weeks ago
• shirondru / enformer_fine_tuning
  For fine-tuning Enformer using paired WGS & gene expression data
  ☆23Updated 2 months ago
• madilabcode / scNET
  ☆57Updated last month
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆23Updated 3 months ago
• snap-stanford / SATURN
  ☆143Updated last year
• Genentech / pascient
  ☆17Updated 6 months ago
• lanagarmire / Asgard
  ☆44Updated last year
• Roy-lab / scMTNI
  ☆30Updated 3 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 3 years ago
• TencentAILabHealthcare / scTranslator
  ☆52Updated 2 months ago
• czi-ai / transcriptformer
  ☆91Updated last week
• czi-ai / scGenePT
  ☆26Updated 9 months ago