PYangLab / Matilda
Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-modality of such data and trains a neural network model to simultaneously learn multiple tasks including data simulation, dimension reduction, visualization, classification, and feature selection.
☆20Updated last month
Alternatives and similar repositories for Matilda:
Users that are interested in Matilda are comparing it to the libraries listed below
- CeLEry: cell location recovery in single-cell RNA sequencing☆32Updated this week
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 4 months ago
- SPROD: Spatial expression profiling de-noising☆33Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated 2 weeks ago
- Methods for visualization and analysis of spatially-resolved gene expression☆15Updated 2 months ago
- ☆51Updated 9 months ago
- CAST package☆27Updated 3 months ago
- ☆16Updated 5 months ago
- ☆20Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 3 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 6 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- Reproducing result from the paper☆33Updated 3 years ago
- cTPnet Package☆24Updated 2 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆26Updated 11 months ago
- ☆27Updated last year
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Reproducing the experiments of the DestVI paper☆17Updated 2 years ago
- Single cell omics biology annotations☆48Updated this week
- ☆44Updated 8 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆21Updated 2 months ago
- Spatial direct messaging detected by bivariate Moran☆24Updated 2 weeks ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆18Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆21Updated 4 months ago
- Gene group activity utility functions for Scanpy☆67Updated last month
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- Materials and scripts for building cell type encyclopedia table☆18Updated 3 weeks ago