Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-modality of such data and trains a neural network model to simultaneously learn multiple tasks including data simulation, dimension reduction, visualization, classification, and feature selection.
☆22Jun 6, 2025Updated 9 months ago
Alternatives and similar repositories for Matilda
Users that are interested in Matilda are comparing it to the libraries listed below
Sorting:
- Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).☆13Jul 15, 2024Updated last year
- Comparison of single cell normalization strategies☆10Aug 13, 2021Updated 4 years ago
- Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscr…☆16Feb 5, 2020Updated 6 years ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 7 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 5 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Feb 24, 2025Updated last year
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- Compilation of R heatmap functions.☆14Oct 12, 2021Updated 4 years ago
- ☆16Jul 9, 2024Updated last year
- R/Bioconductor package for working with 10x scATACseq data☆42Nov 13, 2023Updated 2 years ago
- Single-Cell Multimodal Prediction via Transformer☆28Feb 7, 2024Updated 2 years ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Sep 23, 2020Updated 5 years ago
- ☆17May 15, 2024Updated last year
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Apr 10, 2021Updated 4 years ago
- Predicting transcription factor binding in single cells through deep learning☆13Oct 14, 2022Updated 3 years ago
- ☆15Jul 9, 2025Updated 8 months ago
- ☆29Dec 15, 2021Updated 4 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆12Dec 15, 2025Updated 3 months ago
- ☆62Dec 8, 2025Updated 3 months ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 5 years ago
- A proof of concept RNA-Seq pipeline with Nextflow☆33Jan 13, 2021Updated 5 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆116Sep 29, 2025Updated 5 months ago
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 5 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆19Mar 7, 2020Updated 6 years ago
- Spatial omics analysis toolbox☆362Feb 12, 2026Updated last month
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- Functional enrichment analysis of high-throughput omics data☆20Jan 6, 2025Updated last year
- ☆50Jan 16, 2020Updated 6 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Dec 8, 2022Updated 3 years ago
- ☆17Aug 1, 2023Updated 2 years ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- ☆23Jul 18, 2019Updated 6 years ago
- Unified access to several second-generation deconvolution methods☆95Jan 5, 2026Updated 2 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Nov 10, 2021Updated 4 years ago
- An R package for visualising cell-cell interactions☆46Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆97Feb 23, 2026Updated 3 weeks ago