DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular grammar of protein condensates from sequence determinants and embeddings" (Saar et al., 2021, PNAS)
☆20Dec 30, 2021Updated 4 years ago
Alternatives and similar repositories for DeePhase
Users that are interested in DeePhase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Sep 14, 2021Updated 4 years ago
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆14Apr 10, 2026Updated 2 months ago
- Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B J. Chem. Theory Comput. 2021, 17, 3134. (https://pubs.acs.org/d…☆11Jun 16, 2022Updated 4 years ago
- Implementation of needleman wunsch algorithm for global sequence alignment☆10Mar 2, 2019Updated 7 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Critical Assessment of Intrinsic Disorder☆18Aug 11, 2025Updated 10 months ago
- OpenMM implementation of MOFF, MRG-CG, and HPS models.☆44Jun 10, 2026Updated 3 weeks ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- STRIDE: Protein secondary structure assignment from atomic coordinates☆15Apr 25, 2022Updated 4 years ago
- Long disorder consensus predictor☆24Sep 2, 2025Updated 10 months ago
- ☆48Mar 7, 2026Updated 3 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- 🧬Genomes to proteins, multi-level visualization library☆16May 22, 2026Updated last month
- ☆86May 23, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆22Mar 24, 2026Updated 3 months ago
- ☆29Nov 6, 2022Updated 3 years ago
- localCIDER - sequence analysis tool for disordered protein sequences☆26May 15, 2023Updated 3 years ago
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆14Feb 11, 2026Updated 4 months ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆23Apr 22, 2026Updated 2 months ago
- Protein structural disorder prediction☆20Nov 21, 2024Updated last year
- Next generation sequence parameter library for proteins☆41Jun 9, 2026Updated 3 weeks ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 7 years ago
- ☆19Aug 29, 2025Updated 10 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Predicts if Protein will reside in the protein corona on the surface of engineered nanomaterials☆12Jun 21, 2022Updated 4 years ago
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 4 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Code for NeurIPS 2024 paper: "Noether's razor: Learning Conserved Quantities" by Tycho F. A. van der Ouderaa, Mark van der Wilk, Pim de H…☆10Oct 12, 2024Updated last year
- Notebooks for CPA figures☆15Dec 9, 2022Updated 3 years ago
- ☆30Jan 21, 2024Updated 2 years ago
- An official Molecule Transformer Drug Target Interaction (MT-DTI) model☆36Nov 6, 2020Updated 5 years ago
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model☆14Jun 18, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Mar 14, 2022Updated 4 years ago
- Automatic R pipeline for FGSEA and classic enrichment (GO, KEGG, Reactome, Hallmark)☆18Oct 30, 2025Updated 8 months ago
- A Deep Learning Framework for Allosteric Site Prediction☆17May 21, 2025Updated last year
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 2 years ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- Python package to plot sequence logos☆29Sep 21, 2023Updated 2 years ago