DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular grammar of protein condensates from sequence determinants and embeddings" (Saar et al., 2021, PNAS)
☆20Dec 30, 2021Updated 4 years ago
Alternatives and similar repositories for DeePhase
Users that are interested in DeePhase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Sep 14, 2021Updated 4 years ago
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆13Updated this week
- Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B J. Chem. Theory Comput. 2021, 17, 3134. (https://pubs.acs.org/d…☆10Jun 16, 2022Updated 3 years ago
- Implementation of needleman wunsch algorithm for global sequence alignment☆10Mar 2, 2019Updated 7 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Critical Assessment of Intrinsic Disorder☆17Aug 11, 2025Updated 8 months ago
- OpenMM implementation of MOFF, MRG-CG, and HPS models.☆37Mar 31, 2026Updated 2 weeks ago
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- STRIDE: Protein secondary structure assignment from atomic coordinates☆15Apr 25, 2022Updated 3 years ago
- Long disorder consensus predictor☆22Sep 2, 2025Updated 7 months ago
- ☆31Apr 14, 2024Updated 2 years ago
- 🧬Genomes to proteins, multi-level visualization library☆14Feb 25, 2026Updated last month
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆22Mar 24, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆29Nov 6, 2022Updated 3 years ago
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆13Feb 11, 2026Updated 2 months ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆24Aug 20, 2024Updated last year
- Protein structural disorder prediction☆20Nov 21, 2024Updated last year
- Next generation sequence parameter library for proteins☆39Feb 18, 2026Updated last month
- This repository contains all containers that WARP uses.☆13Apr 7, 2026Updated last week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆67Apr 2, 2025Updated last year
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 6 years ago
- 3D diverse conformers generation using rdkit☆23Mar 10, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Aug 29, 2025Updated 7 months ago
- ☆13Sep 14, 2021Updated 4 years ago
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 4 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Granular Functional Filtering (Gruffi) to isolate stressed cells☆13Nov 7, 2024Updated last year
- ☆30Jan 21, 2024Updated 2 years ago
- An official Molecule Transformer Drug Target Interaction (MT-DTI) model☆35Nov 6, 2020Updated 5 years ago
- Automatic R pipeline for FGSEA and classic enrichment (GO, KEGG, Reactome, Hallmark)☆18Oct 30, 2025Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Deep Learning Framework for Allosteric Site Prediction☆15May 21, 2025Updated 10 months ago
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 2 years ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 11 months ago
- Python package to plot sequence logos☆29Sep 21, 2023Updated 2 years ago
- Organic/biological mass spectrometry data analysis (development version).☆33Jan 27, 2026Updated 2 months ago
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Apr 7, 2026Updated last week