Alternatives and similar repositories for DeePhase

Users that are interested in DeePhase are comparing it to the libraries listed below

• Superzchen / iFeatureOmega-CLI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆34Updated last year
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆70Updated 2 years ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• jiangdada1221 / TEINet
  TEINet: a deep learning framework for prediction of TCR-epitope binding specificity
  ☆15Updated 2 years ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆15Updated 4 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆39Updated 10 months ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆69Updated last month
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆17Updated 2 years ago
• jbloomlab / SARS-CoV-2-RBD_DMS
  Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike
  ☆45Updated 3 years ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 3 months ago
• Wang-Lin-boop / GetPDB
  Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…
  ☆41Updated 11 months ago
• sinc-lab / lncRNA-folding
  ☆18Updated last year
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆24Updated 5 months ago
• tommyhuangthu / SSIPe
  EvoEF + evolutionary profile for ddG_bind prediction
  ☆14Updated 2 years ago
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆27Updated 2 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated 9 months ago
• bm2-lab / PanPep
  ☆49Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• ShenLab / gMVP
  ☆21Updated 2 years ago
• astrazeneca-cgr-publications / DrugnomeAI-release
  ☆17Updated 10 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 7 months ago
• piercelab / tcrmodel2
  ☆41Updated 3 months ago
• biomed-AI / GPSite
  Geometry-aware protein binding site predictor
  ☆20Updated 10 months ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆40Updated 4 months ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆31Updated this week
• TencentAILabHealthcare / ER-BERT
  ☆11Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆66Updated 7 years ago
• kaistomics / DeepNeo
  identification of immunogenic neoepitopes
  ☆12Updated 2 years ago
• gzBiomedical / EpiScan
  Antibody-Specific Epitope Mapping
  ☆13Updated 8 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago