DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular grammar of protein condensates from sequence determinants and embeddings" (Saar et al., 2021, PNAS)
☆20Dec 30, 2021Updated 4 years ago
Alternatives and similar repositories for DeePhase
Users that are interested in DeePhase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Sep 14, 2021Updated 4 years ago
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆14Apr 10, 2026Updated 4 months ago
- Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B J. Chem. Theory Comput. 2021, 17, 3134. (https://pubs.acs.org/d…☆11Jun 16, 2022Updated 4 years ago
- Critical Assessment of Intrinsic Disorder☆18Jul 16, 2026Updated last month
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- STRIDE: Protein secondary structure assignment from atomic coordinates☆16Apr 25, 2022Updated 4 years ago
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 3 years ago
- OpenMM implementation of MOFF, MRG-CG, and HPS models.☆44Jul 29, 2026Updated last month
- Disordered protein ensemble prediction☆16Updated this week
- ☆48Mar 7, 2026Updated 5 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- 🧬Genomes to proteins, multi-level visualization library☆17May 22, 2026Updated 3 months ago
- localCIDER - sequence analysis tool for disordered protein sequences☆26May 15, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated 2 years ago
- A comprehensive computational pipeline that bridges single-cell genomics and cheminformatics to accelerate Alzheimer's Disease research. …☆11Jul 13, 2025Updated last year
- ☆30Nov 6, 2022Updated 3 years ago
- Long disorder consensus predictor☆27Aug 4, 2026Updated last month
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆14Feb 11, 2026Updated 6 months ago
- tg fitness tracking bot☆15Jan 14, 2026Updated 7 months ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆23Apr 22, 2026Updated 4 months ago
- Protein structural disorder prediction☆20Nov 21, 2024Updated last year
- 3D diverse conformers generation using rdkit☆23Mar 10, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆19May 6, 2019Updated 7 years ago
- This repository contains all containers that WARP uses.☆15Updated this week
- Predicts if Protein will reside in the protein corona on the surface of engineered nanomaterials☆12Jun 21, 2022Updated 4 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆70Apr 2, 2025Updated last year
- ☆19Aug 29, 2025Updated last year
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Apr 13, 2026Updated 4 months ago
- Granular Functional Filtering (Gruffi) to isolate stressed cells☆14Nov 7, 2024Updated last year
- ☆30Jan 21, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Associative memory, Water mediated, Structure and Energy Model (AWSEM) protein simulation code☆42Dec 11, 2025Updated 8 months ago
- ☆10Mar 14, 2022Updated 4 years ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 4 years ago
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model☆14Jun 18, 2021Updated 5 years ago
- An official Molecule Transformer Drug Target Interaction (MT-DTI) model☆36Nov 6, 2020Updated 5 years ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆76Aug 22, 2026Updated last week
- Python package to plot sequence logos☆29Sep 21, 2023Updated 2 years ago