cailab-tamu / scTenifoldKnk
R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
☆44Updated 2 months ago
Alternatives and similar repositories for scTenifoldKnk:
Users that are interested in scTenifoldKnk are comparing it to the libraries listed below
- ☆59Updated 5 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆33Updated 4 years ago
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- ☆39Updated 3 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- scWGCNA☆58Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆71Updated 7 months ago
- R package for specialised analysis of single cell data☆37Updated 2 years ago
- ☆61Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 3 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- ☆61Updated 8 months ago
- ☆49Updated 5 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Tools used in Human Cell Landscape(HCL)☆54Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 6 months ago
- Accurate and fast cell marker gene identification with COSG☆42Updated last week
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆72Updated 10 months ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 6 months ago
- ☆60Updated 4 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Gene group activity utility functions for Scanpy☆71Updated 2 months ago