R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
☆308Oct 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for scTenifoldKnk
Users that are interested in scTenifoldKnk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python implementation of scTenifoldNet and scTenifoldKnk workflows.☆69Oct 1, 2026Updated 3 weeks ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆46Sep 29, 2026Updated last month
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆271Jul 8, 2026Updated 3 months ago
- Compound ranking predictions from gene expression signatures using ensemble neural network models.☆94Oct 23, 2026Updated last week
- Useful functions to make your scRNA-seq plot more cool!☆406Apr 18, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Gene knockout inference with variational graph autoencoder learning single-cell gene regulatory networks☆96Aug 15, 2026Updated 2 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆689Mar 4, 2026Updated 7 months ago
- Scissor package☆279May 10, 2024Updated 2 years ago
- This is the alpha version of the CellOracle package☆508Apr 30, 2026Updated 6 months ago
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 4 months ago
- Quantifying metabolism activity at the single-cell resolution☆201Aug 20, 2026Updated 2 months ago
- Machine learning-based integration model with elegant performance☆209Sep 23, 2025Updated last year
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆83Nov 23, 2025Updated 11 months ago
- scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 datase…☆28Jun 23, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆649Jun 26, 2025Updated last year
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,392Updated this week
- In Silico Virtual Knockout Engine for Bulk RNA-seq Cohorts☆18Apr 2, 2026Updated 6 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆491Jun 6, 2025Updated last year
- http://research-pub.gene.com/IMvigor210CoreBiologies/☆12Jun 10, 2024Updated 2 years ago
- One-step to Cluster and Visualize Gene Expression Matrix☆393Jun 25, 2026Updated 4 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆683Mar 11, 2026Updated 7 months ago
- NicheNet: predict active ligand-target links between interacting cells☆683Oct 23, 2026Updated last week
- R package for detecting doublets in single-cell RNA sequencing data☆574Mar 21, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated last year
- An R package for single-cell and spatial omics analysis, integration, interpretation, and visualization.☆318Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- ☆16Jul 21, 2025Updated last year
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆117Sep 17, 2026Updated last month
- Methods for decontamination of single cell data☆70Oct 9, 2026Updated 3 weeks ago
- Assessing the purity of single cell population☆157Jun 3, 2022Updated 4 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 8 months ago
- AUCell: score single cells with gene regulatory networks☆207Mar 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆91Jun 29, 2024Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- ☆191Jan 30, 2026Updated 9 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆790Jan 6, 2024Updated 2 years ago
- A tool for semi-automatic cell type classification