ocxtal / libgabaLinks
Adaptive semi-global banded alignment on string graphs
☆67Updated 7 years ago
Alternatives and similar repositories for libgaba
Users that are interested in libgaba are comparing it to the libraries listed below
Sorting:
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- This is an updated mirror of the original PacBio Read Simulator☆38Updated 7 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Substring index for paths in a graph☆60Updated 4 months ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆63Updated 6 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 9 months ago
- Pan-Genomic Matching Statistics☆53Updated last year
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆89Updated 3 months ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- BWT construction and search☆117Updated last month
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- LoFreq Star: Sensitive variant calling from sequencing data☆106Updated 3 years ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- Banded Striped DNA Sequence Alignment☆47Updated 2 years ago
- ☆47Updated 5 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆54Updated last year
- Global alignment and alignment extension☆134Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- A repository for generating strobemers and evalaution☆79Updated last year
- Data from the Human PanGenomics Project☆60Updated 4 years ago