Alternatives and similar repositories for libgaba

Users that are interested in libgaba are comparing it to the libraries listed below

• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆76Updated 2 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 3 years ago
• bcgsc / biobloom
  Create Bloom filters for a given reference and then use it to categorize sequences
  ☆76Updated last year
• pfaucon / PBSIM-PacBio-Simulator
  This is an updated mirror of the original PacBio Read Simulator
  ☆39Updated 7 years ago
• GATB / gatb-core
  Core library of the Genome Analysis Toolbox with de-Bruijn graph
  ☆65Updated 10 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆50Updated last year
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆46Updated last year
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated last week
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆87Updated 4 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆55Updated 3 years ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆84Updated 2 months ago
• vgteam / graph-genomics-review
  Pangenome graphs (review article on graph-based pangenomic methods)
  ☆72Updated 5 years ago
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆134Updated last month
• ITBE-Lab / MA
  The Modular Aligner and The Modular SV Caller
  ☆46Updated 2 years ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• ggonnella / gfapy
  Gfapy: a flexible and extensible software library for handling sequence graphs in Python
  ☆71Updated last month
• holtjma / fmlrc
  a long-read error correction tool using the multi-string Burrows Wheeler Transform
  ☆45Updated 5 years ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆79Updated last year
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated 10 months ago
• lh3 / ropebwt3
  BWT construction and search
  ☆122Updated this week
• pangenome / seqwish
  alignment to variation graph inducer
  ☆152Updated this week
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆48Updated last year
• shilpagarg / WHdenovo
  ☆46Updated 5 years ago
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆64Updated 4 years ago
• cschin / Peregrine
  Peregrine: Fast Genome Assembler Using SHIMMER Index
  ☆102Updated 3 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆53Updated last year
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆61Updated 4 years ago
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆69Updated 3 years ago
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆110Updated last year