lh3 / ksw2Links
Global alignment and alignment extension
☆134Updated 2 years ago
Alternatives and similar repositories for ksw2
Users that are interested in ksw2 are comparing it to the libraries listed below
Sorting:
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Updated 7 years ago
- Adaptive semi-global banded alignment on string graphs☆66Updated 7 years ago
- SIMD partial order alignment tool/library☆171Updated last year
- Aligns short reads using dynamic seed size with strobemers☆175Updated this week
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆128Updated 2 weeks ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆218Updated last month
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Updated 3 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆193Updated 4 months ago
- Find all significant local alignments between reads☆140Updated last year
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆81Updated 4 months ago
- Assemblies from HPP Year 1 production☆76Updated 2 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated 2 months ago
- alignment to variation graph inducer☆149Updated 2 months ago
- ☆118Updated last year
- Graphical Fragment Assembly (GFA) Format Specification☆214Updated last year
- Assembled Genomes Compressor☆168Updated 9 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆130Updated this week
- Code examples of fast and simple k-mer counters for tutorial purposes☆170Updated 5 years ago
- ☆271Updated last month
- A complete diploid human genome☆126Updated 2 weeks ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆101Updated 3 years ago
- Long read aligner☆115Updated 2 years ago
- Pairwise whole genome aligner☆185Updated last month
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆110Updated 5 months ago
- Yet another k-mer analyzer☆143Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆124Updated 7 years ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆63Updated 7 months ago
- Read Until client library for Nanopore Sequencing☆104Updated 11 months ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year