eth-sri / astarixLinks
AStarix: Fast and Optimal Sequence-to-Graph Aligner
☆74Updated 3 years ago
Alternatives and similar repositories for astarix
Users that are interested in astarix are comparing it to the libraries listed below
Sorting:
- Bidirectional WFA (Paper)☆48Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆67Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆69Updated last year
- A repository for generating strobemers and evalaution☆79Updated last year
- BWT construction and search☆120Updated last week
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- ☆66Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- Banded Striped DNA Sequence Alignment☆47Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆89Updated 6 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆94Updated 5 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆130Updated last week
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- ☆101Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- online notebooks for a review of genome sketching☆60Updated 6 years ago
- Assembled Genomes Compressor☆169Updated 11 months ago
- Efficient, parallel compression for terabyte-scale data☆52Updated last month
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆73Updated 2 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆79Updated 7 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆68Updated 2 years ago
- This is an updated mirror of the original PacBio Read Simulator☆38Updated 7 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 3 months ago
- Genome inference from a population reference graph☆96Updated 7 months ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago