eth-sri / astarixLinks
AStarix: Fast and Optimal Sequence-to-Graph Aligner
☆74Updated 3 years ago
Alternatives and similar repositories for astarix
Users that are interested in astarix are comparing it to the libraries listed below
Sorting:
- Bidirectional WFA (Paper)☆46Updated last year
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆57Updated last month
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated this week
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- A repository for generating strobemers and evalaution☆78Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆64Updated 11 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- ☆62Updated 2 months ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 2 months ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆67Updated 7 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- This is an updated mirror of the original PacBio Read Simulator☆38Updated 7 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆101Updated 3 years ago
- Assembled Genomes Compressor☆165Updated 6 months ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated 8 months ago
- ☆66Updated last year
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- ☆57Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last month
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆25Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆90Updated 2 weeks ago