eth-sri / astarix
AStarix: Fast and Optimal Sequence-to-Graph Aligner
☆74Updated 3 years ago
Alternatives and similar repositories for astarix
Users that are interested in astarix are comparing it to the libraries listed below
Sorting:
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- Bidirectional WFA (Paper)☆46Updated 11 months ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 9 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- A tool for simulating random mutations in any genome☆38Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆78Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Updated last month
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated this week
- vcfdist: Accurately benchmarking phased variant calls☆80Updated 2 weeks ago
- ☆66Updated last year
- ☆56Updated 3 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆32Updated 5 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆63Updated 11 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆57Updated 2 weeks ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Dynamic, adaptive sampling during nanopore sequencing☆32Updated last week
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated 11 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 11 months ago
- ☆116Updated last month
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆89Updated 5 months ago
- A repository for generating strobemers and evalaution☆78Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆67Updated 6 months ago
- Substring index for paths in a graph☆60Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆73Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago