AStarix: Fast and Optimal Sequence-to-Graph Aligner
☆74Dec 25, 2021Updated 4 years ago
Alternatives and similar repositories for astarix
Users that are interested in astarix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- ☆288Dec 29, 2025Updated 5 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆140Jun 23, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- linearize and simplify variation graphs using blocked partial order alignment☆63Mar 31, 2026Updated 2 months ago
- ☆21Nov 1, 2019Updated 6 years ago
- Bidirectional WFA (Paper)☆49May 20, 2024Updated 2 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆137Apr 16, 2026Updated last month
- ☆24Aug 25, 2025Updated 9 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 7 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Banded Striped DNA Sequence Alignment☆53May 9, 2023Updated 3 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- Optimized sequence graph implementations for graph genomics☆36Updated this week
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆244May 1, 2026Updated last month
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated last month
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆93Feb 26, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GBWT-based handle graph☆34May 27, 2026Updated 2 weeks ago
- WFA-lib: Wavefront alignment algorithm library v2☆216Mar 18, 2026Updated 2 months ago
- Assembled Genomes Compressor☆182May 6, 2026Updated last month
- Library for the Handle Graph abstraction☆24Jan 15, 2026Updated 5 months ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆249Dec 16, 2025Updated 5 months ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆29May 5, 2025Updated last year
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- alignment to variation graph inducer☆160Jun 8, 2026Updated last week
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 3 weeks ago
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 8 months ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆225Oct 23, 2025Updated 7 months ago
- SIMD partial order alignment tool/library☆181Sep 21, 2025Updated 8 months ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Substring index for paths in a graph☆61Mar 28, 2026Updated 2 months ago