Alternatives and similar repositories for DEqMS

Users that are interested in DEqMS are comparing it to the libraries listed below

• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆21Updated 2 years ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆46Updated last month
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆15Updated last month
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated 6 months ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆63Updated last month
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆25Updated 5 months ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated 3 weeks ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆23Updated 2 years ago
• mildpiggy / DEP2
  An r package for proteomics data Analysis, developed from DEP.
  ☆32Updated 8 months ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 4 months ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• statOmics / msqrob2
  Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
  ☆13Updated 5 months ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆99Updated 3 months ago
• ProtProtocols / IsoProt
  Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
  ☆12Updated 6 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆41Updated 3 weeks ago
• tidymass / tidymass
  tidymass
  ☆58Updated 2 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 6 months ago
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆30Updated last year
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• nf-core / diaproteomics
  Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
  ☆20Updated 10 months ago
• pnnl / leapR
  ☆18Updated last week
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆25Updated last year
• arnesmits / DEP
  DEP package
  ☆28Updated 3 years ago
• interactivereport / Quickomics
  Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
  ☆42Updated 3 weeks ago
• andreasmock / MetaboDiff
  ☆33Updated 5 years ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆28Updated last month
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆18Updated last week
• UCLouvain-CBIO / scp
  Single cell proteomics data processing
  ☆29Updated last month