yafeng / DEqMS
DEqMS is a tool for quantitative proteomic analysis
☆23Updated 2 months ago
Alternatives and similar repositories for DEqMS:
Users that are interested in DEqMS are comparing it to the libraries listed below
- R package for analysing proteomics data☆49Updated last year
- Methods for label-free mass spectrometry proteomics☆14Updated last year
- Quantitative features for mass spectrometry data☆26Updated last week
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆28Updated 3 months ago
- Differential Expression Analysis tool box R lang package for omics data☆42Updated last week
- tidymass☆54Updated last year
- A tool for large scale omics datasets evaluation☆24Updated last year
- An S3 data object and framework for common quantitative proteomic analyses☆40Updated 3 weeks ago
- The repo for LFQ-Analyst☆29Updated 6 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated 6 months ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆22Updated 4 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- DEP package☆28Updated 2 years ago
- ☆17Updated 2 months ago
- Absolute quantification package based on quantms.io☆13Updated last week
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆17Updated last month
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆18Updated last year
- ☆26Updated 3 weeks ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆33Updated 9 months ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Updated last year
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆10Updated 2 months ago
- Integration ribosome profiling - mass spectrometry☆14Updated this week
- Time-Course Multi-Omics data integration☆24Updated 10 months ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆32Updated 4 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆19Updated 3 weeks ago
- amica: an interactive and user-friendly web-based platform for the analysis of proteomics data☆24Updated 2 months ago
- A guide to running MaxQuant in Linux☆32Updated 5 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated this week
- python scripts for proteogenomics analysis☆10Updated 5 years ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12Updated 5 years ago