Alternatives and similar repositories for DEqMS

Users that are interested in DEqMS are comparing it to the libraries listed below

• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆44Updated this week
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated 11 months ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 2 weeks ago
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆15Updated last week
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆24Updated 3 weeks ago
• tidymass / tidymass
  tidymass
  ☆56Updated 2 months ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆20Updated last year
• statOmics / msqrob2
  Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
  ☆12Updated 2 weeks ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆36Updated this week
• mildpiggy / DEP2
  An r package for proteomics data Analysis, developed from DEP.
  ☆30Updated 3 months ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆61Updated last week
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated this week
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆42Updated last month
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆25Updated 2 years ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated last month
• ProtProtocols / IsoProt
  Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
  ☆12Updated 6 years ago
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• arnesmits / DEP
  DEP package
  ☆28Updated 2 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• andreasmock / MetaboDiff
  ☆31Updated 4 years ago
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆23Updated 10 months ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆33Updated 5 years ago
• nf-core / diaproteomics
  Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
  ☆19Updated 6 months ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆93Updated 2 years ago
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆15Updated 3 months ago
• pFindStudio / pFind3
  ☆27Updated 5 months ago
• bzhanglab / PepQuery
  PepQuery: a targeted peptide search engine
  ☆12Updated last year
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆15Updated last month
• xia-lab / MetaboAnalyst_Docker
  Docker for MetaboAnalyst 4.0
  ☆24Updated 4 years ago