DEP package
☆31Sep 28, 2022Updated 3 years ago
Alternatives and similar repositories for DEP
Users that are interested in DEP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods for label-free mass spectrometry proteomics☆15Mar 23, 2025Updated last year
- The repo for LFQ-Analyst☆30Aug 7, 2024Updated last year
- An r package for proteomics data Analysis, developed from DEP.☆35Mar 21, 2025Updated last year
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆37Mar 5, 2026Updated last month
- DEqMS is a tool for quantitative proteomic analysis☆25Apr 16, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆20Mar 25, 2026Updated 2 weeks ago
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated 11 months ago
- Proteome Generator☆10Apr 18, 2019Updated 6 years ago
- Run any CLI tool on a Reproducible Isolated Environment ⚙️⚡☆14Mar 30, 2026Updated last week
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- A domain knowledge interface for m6A genomics☆11May 13, 2019Updated 6 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆15Apr 14, 2025Updated 11 months ago
- Independent Hypothesis Weighting☆16Sep 25, 2023Updated 2 years ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Mar 31, 2026Updated last week
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Github repository for nanoSPLITS manuscript data and R scripts☆10Oct 11, 2024Updated last year
- High quality in silico spectral library generation for data-independent acquisition proteomics☆19Mar 31, 2026Updated last week
- Report processing and protein quantification for MS-based proteomics☆52Jun 29, 2023Updated 2 years ago
- Quantitative features for mass spectrometry data☆29Mar 22, 2026Updated 2 weeks ago
- Kinase-Substrate Enrichment Analysis (KSEA) App☆10May 2, 2017Updated 8 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14May 1, 2023Updated 2 years ago
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆52Aug 12, 2025Updated 7 months ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 6 months ago
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆47Feb 19, 2026Updated last month
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- TopPIC suite is a software suite for proteoform identification by top-down mass spectrometry.☆14Mar 10, 2026Updated last month
- Behavior-Driven Development and Executable Specifications for R☆32Aug 31, 2025Updated 7 months ago
- A cross-platform proteomics data analysis suite☆284Updated this week
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Updated this week
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆13Mar 10, 2023Updated 3 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 6 years ago
- ☆10Dec 4, 2019Updated 6 years ago
- The database and API backend for ZincBind - the database of zinc binding sites☆16Apr 8, 2025Updated last year
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 6 months ago
- ☆16Apr 3, 2026Updated last week
- Tools for the analysis of heterogeneous tissues☆14Aug 24, 2022Updated 3 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Updated this week
- Algorithmic and Utility Extensions for the Imaris Program☆20Mar 18, 2026Updated 3 weeks ago
- Algorithms for Working With and Modifying Polygon Boundaries☆15Feb 7, 2023Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆40Jun 6, 2024Updated last year