Alternatives and similar repositories for DEP

Users that are interested in DEP are comparing it to the libraries listed below

• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆47Updated last month
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆15Updated 10 months ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆69Updated 2 months ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆33Updated last year
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆65Updated last month
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆78Updated last month
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆66Updated 4 years ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆80Updated this week
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆99Updated 5 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 11 months ago
• DillonHammill / CytoExploreR
  Interactive Cytometry Data Analysis
  ☆67Updated 2 months ago
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆92Updated 4 years ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆65Updated 11 months ago
• SmythLab / limpa
  Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…
  ☆19Updated last week
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆62Updated last year
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆30Updated last year
• mildpiggy / DEP2
  An r package for proteomics data Analysis, developed from DEP.
  ☆34Updated 10 months ago
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆37Updated 2 years ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆24Updated 6 months ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆46Updated 3 months ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆49Updated 2 years ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆37Updated 2 months ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆33Updated 5 months ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆84Updated 6 months ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆107Updated 2 years ago
• Bioconductor / OrchestratingSingleCellAnalysis
  Content for the OSCA Book.
  ☆66Updated 2 years ago
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆26Updated 3 months ago
• brennanpincardiff / drawProteins
  Creating package to draw proteins from Uniprot API
  ☆35Updated 2 weeks ago